Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h20
         (140 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41272-4|AAA82448.2|  349|Caenorhabditis elegans Hypothetical pr...    30   0.26 
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    26   3.2  
U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine re...    25   9.7  

>U41272-4|AAA82448.2|  349|Caenorhabditis elegans Hypothetical
           protein T03G11.3 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 134 SWRRKHGQYIDRIYSSKR 81
           +WR +HG +ID + SSKR
Sbjct: 90  NWRERHGNFIDAVSSSKR 107


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 56  SLLACTAVYAYCCK-CGQYI 112
           SLLAC A YA C K C +YI
Sbjct: 825 SLLACIACYALCRKRCCRYI 844


>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  TILCWLALLSTLTAVNAVNILAVFPTPAYS 140
           T  CW   L +L A+   +ILAV+ T  Y+
Sbjct: 87  TYSCWFIQLYSLIAIAGSHILAVYGTLYYA 116


>AF077542-1|AAC26295.2|  386|Caenorhabditis elegans Serpentine
          receptor, class w protein66 protein.
          Length = 386

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 38 EAKNDYSLLACTAVYAYC 91
          ++KN Y+ LAC AV+  C
Sbjct: 34 KSKNAYNWLACVAVFINC 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,146
Number of Sequences: 27780
Number of extensions: 25528
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)