Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h17
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.34 
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   3.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   5.6  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   5.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.7  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 449 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 541
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 24  CLRCCTKYTRLSTDTKVKFPYAALSYIN 107
           CLRC +    ++++T V  PY   S +N
Sbjct: 315 CLRCLSSSRIVNSETNVMVPYMIYSILN 342


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 228 TLWTAFKTTEAHEVVYEMKLFQA 296
           +L T   TTE HE  Y  KL +A
Sbjct: 383 SLTTGLSTTEGHETGYSRKLHEA 405


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 14  KVGLFTXLHKIHKVIDRHKSEVSLCCVV 97
           KV  ++ +HK+ K++DR    +  C ++
Sbjct: 25  KVFYWSQIHKVRKLVDRSIERMESCSII 52


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 141 GYMATFNEFEYLQYWFLLSFLMSVALNAPTLW 236
           GY   +   EY    F LS   S + NAPT W
Sbjct: 207 GYKMKYKHPEYHYTDFQLSNGSSYSCNAPTFW 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,081
Number of Sequences: 5004
Number of extensions: 45541
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)