Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h09
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    32   0.057
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    28   0.93 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   1.6  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   2.8  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    26   3.7  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   5.0  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   6.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   6.5  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   8.7  
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    25   8.7  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   8.7  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.7  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
 Frame = +3

Query: 291 AVRSKLFKNELTSLGVKI---KKKDVLVETDQPCQLDVSVESLNALPALLNNGDVLTXXX 461
           A  +K F+ E+  + V +   K   ++ E ++P  L+   + L ++ A+  +   +T   
Sbjct: 191 AQATKAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNE--DKLKSVRAVFKSNGTVTAAN 248

Query: 462 XXXXXXXXXXXXXXXEESVLTQNLKPLARLVGWTTVGVDPQ 584
                             V    LKPLA+++GW     DP+
Sbjct: 249 ASTLNDGASALVLMSAAKVKELGLKPLAKIIGWGEAAQDPE 289



 Score = 28.3 bits (60), Expect = 0.93
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 178 GKTP-RYCGIYSGLPIERSALGVSKACGTGIQAVISSA 288
           G+ P R C + +GLP       V+K C +G++A I  A
Sbjct: 64  GQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGA 101


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
 Frame = +2

Query: 392 C*R*KFKCTSCVIKQRGCFNCRKF---C--CTSGWRCCLSPRERRICFNPKPKTPGKISR 556
           C R K +CT   I  + C  C+K    C   T+ WR C        C    P T GK + 
Sbjct: 19  CRRRKIRCTGSDIPGQPCLACQKAHADCHFSTTSWRACRKKSAPLHC----PSTNGKTNV 74

Query: 557 VDNSRGRPS 583
           + +    PS
Sbjct: 75  LPSYASTPS 83


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 383 PTGC*R*KFKCTSCVIKQRGCFNCRKFCCTSGWRCCLSPRERRICFNPKP 532
           P+ C + K  C S   K   C   +K CC++    C S  ++  C + KP
Sbjct: 237 PSCCSQEKKSCCSSK-KPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKP 285



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 335 CED*KERCSS*DRPTVPTGC*R*KFKCTSCVIKQRGCFNCRKFCCTSGWRCCLSPRERRI 514
           C   K+ C S  +P+    C + K  C S   K   C   +K CCTS    C S  +  +
Sbjct: 240 CSQEKKSCCSSKKPSC---CSQEKKGCCSTE-KTSCCSQEKKSCCTSEKPSCCSNGKSTV 295

Query: 515 C 517
           C
Sbjct: 296 C 296


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 238 LRLISQWVIRNKSRNILESFLHHI 167
           L  I QW  +N + NI ++FLH++
Sbjct: 80  LASIPQWFKKNVTSNIFKNFLHYL 103


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 308 QFRSHCTALEMTAWIPVPQALLTPKADLSMGNPE*IPQ 195
           QF+  C A  +   IPVP+   +P+   S G+ +  P+
Sbjct: 300 QFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPE 337


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 262 QYRRLC*RLRLISQWVIRNKSRNILESFLHHIGLASSGFQPWYSH 128
           +Y  L  +L     W+    S N L ++LH +G+  S  +   SH
Sbjct: 171 EYDALTSKLGNTGDWIYDTWSDNELRTWLHDVGVPISSHESTRSH 215


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 494 SPRERRICFNPKPKTPGKIS 553
           SPR+ R+ F  +P +P KIS
Sbjct: 722 SPRKSRLSFGGRPGSPSKIS 741


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 573 PRLLSTRLILPGVLGFGLKQILRSRGLRQQRHPL 472
           P ++     L GVLG   +  + SR L +  HPL
Sbjct: 378 PEIIENAFNLSGVLGLFNESAVTSRALDEMIHPL 411


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +3

Query: 510 ESVLTQNLKPLA--RLVGWTTVGVDPQDT 590
           ++VL Q+ K  A  +L GWT++G+D ++T
Sbjct: 617 QAVLFQSTKSTASFQLPGWTSLGMDLENT 645


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 521 NPKPKTPGKISRVDNSRGRP 580
           NP  +TP  I+RVD+  G+P
Sbjct: 196 NPPHRTPININRVDDRIGKP 215


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 235 RLISQWVIRNKSRNILESFLHHIGLASSGFQPWYSH 128
           ++++  +++ +  N + S   HIG+A++GF P   H
Sbjct: 51  KVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQH 86


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 271 LGFQYRRLC*RLRLISQWVIRNKSRN 194
           LGF  R+L      I QW+ + K+ N
Sbjct: 268 LGFHQRQLAREQAKIQQWIAKRKAEN 293


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 446 FNCRKFCCTSGWRCCLSPRERRICFNPK 529
           FN   FC   G   CL PRE+ + + P+
Sbjct: 18  FNFAIFCAFIGLFLCLRPREKHV-YQPR 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,752
Number of Sequences: 5004
Number of extensions: 46821
Number of successful extensions: 134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)