Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h09
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0480 + 8785130-8785192,8785472-8785518,8786415-8786508,878...    29   3.8  
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813...    28   6.7  

>03_02_0480 +
           8785130-8785192,8785472-8785518,8786415-8786508,
           8786598-8786699,8786988-8787259,8787343-8787420,
           8787648-8787894
          Length = 300

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 404 KFKCTSCVIKQRGCFNC 454
           KF C +CV KQ  CF C
Sbjct: 72  KFICKNCVYKQHQCFGC 88


>03_02_0400 -
           8135283-8135490,8136047-8136213,8136289-8136477,
           8136560-8136655,8136746-8136874,8136947-8137123,
           8137256-8137366,8138592-8138792,8139022-8139186,
           8139293-8139527,8139618-8139745,8139833-8139928,
           8140017-8140112,8140252-8140325,8140393-8140462,
           8140556-8140665,8140753-8140906,8141040-8141155,
           8141259-8141379,8141464-8141641,8142331-8142489,
           8142619-8142732,8142821-8143000,8143098-8143177
          Length = 1117

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 503 ERRICFNPKPKTPGKISRVDNSRGRPSG 586
           + ++C NP+P    K   VD+S G+P+G
Sbjct: 182 QHQLCKNPRPNPDIKTLFVDHSCGQPNG 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,439
Number of Sequences: 37544
Number of extensions: 308249
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)