Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h03
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   2.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   2.0  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    25   4.5  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 170 LVDYDEDFDERTNP*TQSTEFLAGSSQ 90
           + DYD + +E  NP TQ TE ++ S +
Sbjct: 384 IYDYDSEDEEYNNPSTQKTEKVSQSKK 410


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 129 WV-SSLIEVFVVIDEDGDQCLRVLKAPTVNPGDPTRHISGDGGFALPRNFMQINF 290
           W+ SSL+EVF V DE  +  + +  A  V      +++S D    L R F+ I +
Sbjct: 443 WIPSSLLEVFYVNDETTNAAVEICMAELV-----LQYLSSDTQTRLNRLFLSIKY 492


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 111 LSGLCL-WVSSLIEVFVVID 167
           L G+CL W SS +E+F V+D
Sbjct: 10  LFGVCLAWTSSDLEIFRVVD 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,715
Number of Sequences: 5004
Number of extensions: 29813
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)