Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h03
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0168 + 14665778-14666503                                         33   0.12 
05_05_0118 - 22504483-22504566,22504650-22504742,22504852-225049...    29   1.1  
01_06_0475 + 29610268-29610711                                         29   1.9  
03_06_0080 - 31512792-31513046,31514087-31514202,31514797-315149...    27   4.3  
12_01_0272 + 1985348-1986036,1986142-1988020                           27   5.7  
10_06_0014 - 9605186-9607609                                           27   5.7  
03_01_0317 + 2492030-2492591,2493189-2493249,2493951-2494066,249...    27   5.7  
11_01_0271 + 2039100-2041760                                           27   7.6  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    27   7.6  

>07_03_0168 + 14665778-14666503
          Length = 241

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -2

Query: 220 PGFTVGAFRTLKHWSPSSSITTKTSMSELTHRHSPLSFSPDLLSGSRFRSGGR 62
           P FT+ A     H  PSSS   +TS S  +H +S    SPD  + SR R   R
Sbjct: 114 PDFTLAA-AAAAHRHPSSSAAPETSASCHSHSNSRADASPDRAAASRARGRQR 165


>05_05_0118 -
           22504483-22504566,22504650-22504742,22504852-22504914,
           22505048-22505145,22505378-22505478,22505581-22505653,
           22505872-22505910,22506946-22507018
          Length = 207

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 404 FFCIFAFYCITGKCVLLKCTIYFFVTSFVKLICIKFLIKINLHKISGQR 258
           F  + +  C+   C+LL+ +   F TSF+  I I F  KI   ++ G+R
Sbjct: 30  FLVLSSIQCVGKSCLLLRFSDGSFTTSFITTIGIDF--KIRTIELDGKR 76


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/45 (40%), Positives = 19/45 (42%)
 Frame = -2

Query: 232 LVGSPGFTVGAFRTLKHWSPSSSITTKTSMSELTHRHSPLSFSPD 98
           LVG   F      T    SP SS     S +  T  HSP S SPD
Sbjct: 36  LVGCKRFIEQTVETSSSPSPMSSSPPSRSSTRATLTHSPSSASPD 80


>03_06_0080 -
           31512792-31513046,31514087-31514202,31514797-31514911,
           31514997-31515056,31515619-31515688,31515952-31515986,
           31516094-31516231,31516369-31516737
          Length = 385

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 383 YCITGKCVLLKCTIYFFVTSFVKLICIKFLIKI 285
           Y   G CV  K  + +  T+ VKL+C+  L+K+
Sbjct: 184 YDTIGTCV--KAAVVYLGTALVKLVCLATLLKV 214


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 371 GKCVLLKCTIYFFVTSFVKLICIKFLIKI 285
           G C  +K +IY FV     L+CI F + +
Sbjct: 619 GSCRKVKTSIYVFVLVLAVLLCIAFQVAL 647


>10_06_0014 - 9605186-9607609
          Length = 807

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 114 SGLCLWVSSLIEVFVVIDEDGDQCLRVLKAPTVNPGDPTRHISGDGGFAL 263
           S LC+W + L  +  +   +G+        P V+P  P   ISGDG   +
Sbjct: 63  SYLCIWYNKLPMITPLWSANGEN-------PVVDPASPELTISGDGNMVI 105


>03_01_0317 +
           2492030-2492591,2493189-2493249,2493951-2494066,
           2494662-2495176
          Length = 417

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 174 GDQCLRVLKAPTVNPGDPTRHISGDGGFALPR 269
           GD+  R+ +     PG    H+ GD GFA PR
Sbjct: 118 GDRA-RLARQARAGPGRANVHVVGDPGFANPR 148


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 371 GKCVLLKCTIYFFVTSFVKLICIKFLIKI 285
           G C  +K ++Y FV     L+CI F + +
Sbjct: 654 GSCRKVKTSVYVFVLVLAVLLCIAFQVAL 682


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 274 KFRGNAKPPSPEICLVGSPGFTVGAFRTLKHWSPSS 167
           + RG A PP P    VG PG  V A    K  S S+
Sbjct: 48  QLRGEASPPPPPPPPVGPPGAAVVAAAARKEASASA 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,379,934
Number of Sequences: 37544
Number of extensions: 198231
Number of successful extensions: 526
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)