Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h03
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U30943-1|AAC47116.1|  192|Caenorhabditis elegans cyclophilin-1 p...    29   0.98 
AL033512-4|CAA22075.1|  192|Caenorhabditis elegans Hypothetical ...    29   0.98 
AF022972-6|AAM29670.1|  370|Caenorhabditis elegans Hypothetical ...    29   0.98 
AC024853-3|ABP57809.1|  244|Caenorhabditis elegans Hypothetical ...    29   0.98 
U00052-5|AAK21423.1|  289|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U30943-1|AAC47116.1|  192|Caenorhabditis elegans cyclophilin-1
           protein.
          Length = 192

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 99  SGEKLSGLCLWVSSLIEVFVVIDEDGDQCLRVLKAPTVNPGDPTRHISGDGGFALPRN-F 275
           + E    LC     + E  V +   G +  R++    +  GD TRH +G GG ++  N F
Sbjct: 50  TAENFRALCTGEKGVGEQGVALHFKGSKFHRIIPEFMIQGGDFTRH-NGTGGESIYGNKF 108

Query: 276 MQINFDQK 299
              NFD K
Sbjct: 109 KDENFDLK 116


>AL033512-4|CAA22075.1|  192|Caenorhabditis elegans Hypothetical
           protein Y49A3A.5 protein.
          Length = 192

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 99  SGEKLSGLCLWVSSLIEVFVVIDEDGDQCLRVLKAPTVNPGDPTRHISGDGGFALPRN-F 275
           + E    LC     + E  V +   G +  R++    +  GD TRH +G GG ++  N F
Sbjct: 50  TAENFRALCTGEKGVGEQGVALHFKGSKFHRIIPEFMIQGGDFTRH-NGTGGESIYGNKF 108

Query: 276 MQINFDQK 299
              NFD K
Sbjct: 109 KDENFDLK 116


>AF022972-6|AAM29670.1|  370|Caenorhabditis elegans Hypothetical
           protein F10D2.12 protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 365 CVLLKCTIYFFVTSFVKLICIKFLIKI 285
           CVL+   + F +T  V+ +C +FL+KI
Sbjct: 341 CVLVLACVVFVLTRVVQFLCRRFLVKI 367


>AC024853-3|ABP57809.1|  244|Caenorhabditis elegans Hypothetical
           protein Y71F9AR.2 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 259 AKPPSPEICLVGSPGFTV--GAFRTLKHWSPSSSITTKTSMSELTHRHSPLSFSPDLLSG 86
           A+ PSP  C   S   T   GAF  L+  S SS +  KTS    T   +PL  +P L   
Sbjct: 176 ARSPSPRQCSSDSEIITPRKGAFAALRSSSRSSQVRAKTS---TTKTPAPLHKTPSL--- 229

Query: 85  SRFRSGGR 62
           S+ ++G +
Sbjct: 230 SKLKTGSK 237


>U00052-5|AAK21423.1|  289|Caenorhabditis elegans Hypothetical
           protein K02F3.8 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 392 FAFYCITGKCVLLKCTIYFFVTSFVKLICIKFLIK 288
           F+ YC+TGK   L+  +  F ++++K   IK ++K
Sbjct: 98  FSTYCLTGKLASLEGLLATFCSTYMKNCNIKGIVK 132


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
           protein E03G2.2 protein.
          Length = 1503

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 265 PEILCRLILIRNFMQINFTKLVTKKYIVHFKRTHFPVMQ*KANIQ 399
           PE++ R+   R    + +  LV  ++++HF    FP+ +   N++
Sbjct: 148 PELVARIDFFRYVAYLTYFPLVVAEFVLHFVSDPFPMPRGYQNLK 192


>Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical
           protein Y41E3.16 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 368 KCVLLKCTIYFFVTSFVKLICIKFLIKINLHKIS 267
           + V+   TIYFF + F  L    + I +NLH +S
Sbjct: 630 RIVISSPTIYFFFSEFCLLKRTDYRIPLNLHYVS 663


>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical
           protein W04D2.1b protein.
          Length = 894

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 278 HKISGQRKAAVARNMSCRIPRIH 210
           H  SG RKA  A N  CR+ +++
Sbjct: 252 HYFSGMRKAETAANRICRVLKVN 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,043
Number of Sequences: 27780
Number of extensions: 177521
Number of successful extensions: 586
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)