Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7h03
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.027
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   7.1  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   7.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.7 bits (61), Expect = 0.027
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 383 YCITGKCVLLKCTIYFFVTSFVKLI 309
           Y I G   +LKC +  FV  FVK++
Sbjct: 113 YAIRGNSAILKCVVPSFVADFVKVL 137


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = -1

Query: 173 VLVDYDEDFDE 141
           ++VDY+++FDE
Sbjct: 258 IMVDYEDEFDE 268


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 167 VDYDEDFDERTNP*TQSTEF 108
           +DYD D DER     QS E+
Sbjct: 45  LDYDFDNDERRQAAIQSGEY 64


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 56  AESTTGSESRPTEKIRRETQ 115
           A  TTG+ + PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 193 TLKHWSPSSSITTKTSM 143
           +LKH++  SS+TT   M
Sbjct: 262 SLKHFTIQSSVTTSKMM 278


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 178 SPSSSITTKTSMSELTHRHSPLSFS 104
           SP+S+I     M +   RH P+  S
Sbjct: 96  SPNSTIAVCVCMRKCPRRHRPVCAS 120


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 200 F*DPQALVTVLVDYDEDFDER 138
           F D ++    L+DY ED+ +R
Sbjct: 137 FQDSRSKDVYLIDYPEDYGKR 157


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 200 F*DPQALVTVLVDYDEDFDER 138
           F D ++    L+DY ED+ +R
Sbjct: 137 FQDSRSKDVYLIDYPEDYGKR 157


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 200 F*DPQALVTVLVDYDEDFDER 138
           F D ++    L+DY ED+ +R
Sbjct: 137 FQDSRSKDVYLIDYPEDYGKR 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,534
Number of Sequences: 438
Number of extensions: 1765
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)