Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7g19
         (276 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...    96   1e-19
UniRef50_A6F1T3 Cluster: Chemotaxis protein histidine kinase and...    31   3.8  
UniRef50_A6C699 Cluster: Putative uncharacterized protein; n=2; ...    31   3.8  
UniRef50_A0QII3 Cluster: Oxidoreductase, short chain dehydrogena...    31   3.8  
UniRef50_Q31G20 Cluster: Putative uncharacterized protein; n=1; ...    31   5.0  
UniRef50_Q94J61 Cluster: Putative uncharacterized protein P0468H...    30   8.7  
UniRef50_Q5KMS6 Cluster: Expressed protein; n=1; Filobasidiella ...    30   8.7  

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 53/87 (60%), Positives = 54/87 (62%)
 Frame = +2

Query: 14  MEEIVPLVVSAASAIPSLVDAFSSSKPPQTDTPPARSMDMQXXXXXXXXXXXXXXXXXXX 193
           MEEIVPLVVSAASAIPSLV+AFSSSKPPQTD P ARSMDMQ                   
Sbjct: 1   MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQPLPSSDSVVLSSQPLPPAP 60

Query: 194 XXXXXXXXXXXXQRLIIPFQRLYFDLT 274
                       QRLIIPFQRLYFDLT
Sbjct: 61  PPPLGSSLGRSPQRLIIPFQRLYFDLT 87


>UniRef50_A6F1T3 Cluster: Chemotaxis protein histidine kinase and
           related kinase; n=1; Marinobacter algicola DG893|Rep:
           Chemotaxis protein histidine kinase and related kinase -
           Marinobacter algicola DG893
          Length = 2501

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 8   LFM-EEIVPLVVSAASAIPSLVDAFSSSKPPQTDT 109
           +FM ++I  L+    +A+P LVD F   +PP  DT
Sbjct: 852 IFMNDDIAALLEDVTAALPELVDDFEKRQPPSRDT 886


>UniRef50_A6C699 Cluster: Putative uncharacterized protein; n=2;
           Planctomyces maris DSM 8797|Rep: Putative
           uncharacterized protein - Planctomyces maris DSM 8797
          Length = 285

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 128 PWNAQAGY-QSEGVWKKRKHRPRREWPKRQKRLKAQFLP 15
           PW  +  Y +++ + ++   RPRR+ PK++KR   QF P
Sbjct: 62  PWRMKMPYPKNQPLTRRLLQRPRRKRPKQRKRRPLQFSP 100


>UniRef50_A0QII3 Cluster: Oxidoreductase, short chain
           dehydrogenase/reductase family protein; n=3;
           Actinomycetales|Rep: Oxidoreductase, short chain
           dehydrogenase/reductase family protein - Mycobacterium
           avium (strain 104)
          Length = 312

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 110 GYQSEGVWKKRKHRPRREWPKRQKRLKAQFL 18
           G+ + G+W+  +HRP R  P +Q+R   Q L
Sbjct: 199 GFLNTGIWESWRHRPPRYAPTQQRRTPEQTL 229


>UniRef50_Q31G20 Cluster: Putative uncharacterized protein; n=1;
           Thiomicrospira crunogena XCL-2|Rep: Putative
           uncharacterized protein - Thiomicrospira crunogena
           (strain XCL-2)
          Length = 283

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 128 PWNAQAGYQSEGVWKKRKHRPRREWPKRQKRLKAQFL 18
           PW  +A +     W K K    R+W +R K L+AQF+
Sbjct: 123 PWQNRAEFYQ--AWSKTKLTQLRDWLQRTKSLQAQFI 157


>UniRef50_Q94J61 Cluster: Putative uncharacterized protein
           P0468H06.7; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0468H06.7 - Oryza sativa subsp. japonica (Rice)
          Length = 166

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  AASAIPSLVDAFSSSKPPQTDTPP 115
           A S  P   D++SSS PP T TPP
Sbjct: 126 AHSRSPCQADSYSSSSPPPTPTPP 149


>UniRef50_Q5KMS6 Cluster: Expressed protein; n=1; Filobasidiella
           neoformans|Rep: Expressed protein - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 675

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +2

Query: 38  VSAASAIPSLVDAFSSSKPPQTDTPP 115
           V  ASAIP  V A +SSKPP   T P
Sbjct: 94  VEPASAIPPHVTASTSSKPPSRSTTP 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,675,913
Number of Sequences: 1657284
Number of extensions: 2493719
Number of successful extensions: 10258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10250
length of database: 575,637,011
effective HSP length: 69
effective length of database: 461,284,415
effective search space used: 10148257130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)