Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7g19
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    29   0.16 
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   0.49 
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   0.86 
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   0.86 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   2.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   2.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    23   8.0  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   8.0  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    23   8.0  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    23   8.0  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    23   8.0  

>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 41  SAASAIPSLVDAFSSSKPPQTDTPP 115
           S  S+ PSL  +  +S PP T TPP
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTPP 182


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 5   DLFMEEIVPLVVSAASAIPSLVDAFSSSKPPQTD 106
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 95  GVWKKRKHRPRREWPKRQKRLKAQF 21
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143



 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 123 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 154



 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 134 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 165



 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 145 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 176


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 47  ASAIPSLVDAFSSSKPPQTDTPPARSMD 130
           A+  P++V  F +   PQ D PP R+++
Sbjct: 211 ATGYPAIVVPFLNGSLPQADLPPLRTIE 238


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  VVSAASAIPSLVDAFSSSKPPQTDTPPARS 124
           V  ++S +P     F SSKP   + PPA S
Sbjct: 312 VSPSSSFVPMYPTTFPSSKPQIVNAPPAPS 341


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 59  PSLVDAFSSSKPPQTDTPPARSM 127
           PS++   SSS  P +  PP+ S+
Sbjct: 132 PSIISISSSSSDPSSSPPPSSSL 154


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQ 24
           +A  Q E   K+ + R +RE  K+Q+ L+ Q
Sbjct: 630 EAKRQEEARKKREEQRLKREQEKKQQELERQ 660


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 101  SEGVWKKRKHRPR 63
            S  VW KR+H P+
Sbjct: 1248 SSSVWNKREHHPK 1260


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 68  VDAFSSSKPPQTDT--PPARS 124
           +D + SSK PQT+T  PP  S
Sbjct: 346 LDVYLSSKAPQTETQLPPVDS 366


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 211 FPGTVSSTFDHPFSTPVLRSYR 276
           F     +TFDHPF+  +++ ++
Sbjct: 222 FEQIAPATFDHPFANVMVKHFK 243


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 29  PLVVSAASAIPSLVDAFSSSKPPQT 103
           P + S    IPS   A  SS+PP T
Sbjct: 298 PSIPSTIPTIPSAYSASVSSQPPLT 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 826,108
Number of Sequences: 5004
Number of extensions: 10020
Number of successful extensions: 56
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)