Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7g19
(276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0927 - 9123473-9123589,9124534-9124616,9125177-9125252,912... 27 2.1
02_05_0206 - 26773420-26773536,26773858-26773953,26774640-267747... 27 2.8
09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385 26 5.0
06_03_1048 + 27146475-27146652,27146739-27146804,27146880-271469... 26 5.0
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 25 6.5
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 25 6.5
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 25 8.7
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 25 8.7
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 25 8.7
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148... 25 8.7
>08_01_0927 -
9123473-9123589,9124534-9124616,9125177-9125252,
9125641-9125740,9125996-9126064,9126122-9126207,
9126293-9126430,9126688-9126810,9128130-9129719,
9129929-9130402
Length = 951
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 41 SAASAIPSLVDAFSSSKPPQTDTPPARSM 127
S+AS P +SSS PP++ TPP + +
Sbjct: 3 SSASEQPRGDQVWSSSSPPRSSTPPPQPL 31
>02_05_0206 -
26773420-26773536,26773858-26773953,26774640-26774749,
26774835-26774935,26775340-26775638
Length = 240
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 80 RKHRPRREWPKRQKRLKAQF 21
RKHRP R WP+ +L F
Sbjct: 216 RKHRPTRVWPELSSKLLDYF 235
>09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385
Length = 493
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 29 PLVVSAASAIPSLVDAFSSSKPPQTDTPP 115
PL AA+ I ++V A SSS T TPP
Sbjct: 7 PLCALAAALIAAVVAATSSSLAEATATPP 35
>06_03_1048 +
27146475-27146652,27146739-27146804,27146880-27146975,
27147073-27147152,27148165-27148209,27148326-27148420,
27148623-27148632
Length = 189
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 14 MEEIVPLVVSAASAIPSLVDAFSSSKPPQTDTPP 115
+ ++PL +AA++ P L S + PP +PP
Sbjct: 10 LPRLLPLAAAAAASKPYLPGKPSPAPPPPLSSPP 43
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 17 EEIVPLVVSAASAIPSLVDAFSSSKPPQTDTPP 115
E+ +P S A+++ S + PPQ TPP
Sbjct: 127 EDEIPAAQSKAASLSSSSSSSPPPPPPQESTPP 159
>04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 101 SEGVWKKRKHRPRREWP 51
SE VWK H P WP
Sbjct: 1305 SEAVWKIEDHLPSPNWP 1321
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 29 PLVVSAASAIPSLVDAFSSSKPPQTDTPPA 118
P + A A P + + S PP T TPPA
Sbjct: 91 PPTPAQAGAPPPSIAPGTGSPPPATTTPPA 120
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 59 PSLVDAFSSSKPPQTDTPPARSMD 130
PS DA S+S PP PP R +
Sbjct: 67 PSRDDASSASSPPPPPRPPRRPFE 90
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 65 LVDAFSSSKPPQTDTPPARS 124
L+ AF S P Q TPPARS
Sbjct: 116 LLVAFDLSPPEQPCTPPARS 135
>01_01_0172 +
1485170-1485176,1485480-1485511,1485622-1485870,
1486350-1487813,1487906-1487959
Length = 601
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 26 VPLVVSAASAIPSLVDAFSSSKPPQTD 106
VP + +P++V S+ PPQ+D
Sbjct: 152 VPTAIPKNGGVPTVVHLHGSAHPPQSD 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,761,337
Number of Sequences: 37544
Number of extensions: 78370
Number of successful extensions: 331
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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