Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7g15
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL117207-16|CAH60778.1|  402|Caenorhabditis elegans Hypothetical...    29   4.1  

>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 4   KLIKAYQKHSNTYQSCTN--HKYK-SVLLKKWTQDVMDNELLIEFRPYKNCDAF-CL 162
           KL   + KHS   +   N  + YK  V+  +W  D +   L++  +PYK  D+  CL
Sbjct: 489 KLYIIFSKHSKAIEESKNIENLYKCDVVTMEWVLDSISEYLILPTQPYKAVDSIGCL 545


>Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical
           protein ZC412.1 protein.
          Length = 450

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -1

Query: 393 HVRALPRYSKTMDPY*FFIVAKRRSAGLLP----ITNTQKHKHVQLLSRRQLSPFFQVIY 226
           +V  +   S   +P  +F ++KR    L      +TN ++H +V +LSR   SP   V+Y
Sbjct: 303 NVHVIAMTSIVWNPVLYFWMSKRHRRALKDDMTWLTNARRHTNVGVLSRFTPSPSVSVVY 362


>AL117207-16|CAH60778.1|  402|Caenorhabditis elegans Hypothetical
           protein Y60A3A.24 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = -2

Query: 665 FSVVQXYNVAKTEMVNQRIDIISKNIEDLKNSLKSYT*IKMSNK 534
           F ++Q ++     +VNQ  D+I KN++ ++  +++ +  K + K
Sbjct: 230 FFLIQLFSSVGNVVVNQHADLIGKNLKKIEKEIENISESKKAEK 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,632
Number of Sequences: 27780
Number of extensions: 333085
Number of successful extensions: 987
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)