Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7g14
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    24   7.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    24   7.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    24   9.7  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   9.7  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 192 FSSKTSRIXQYYNKNR 145
           FS   +R  QYYN NR
Sbjct: 319 FSQSVARYRQYYNSNR 334


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -1

Query: 374 FIFHGRAXEFVFA--ARFPETXSXFXYN 297
           FIFHGR  +  FA  +  PE+   F  N
Sbjct: 267 FIFHGRPLKLTFARPSPLPESIQNFCSN 294


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 161 YWXIREVLLLKVHTYFLKTYSTVY 232
           YW +R  L++++   FL   STV+
Sbjct: 400 YWRMRRYLIIQLIRVFLSGLSTVH 423


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 99  LFEFCCGICVFIPIISYFYCNIGKYVK 179
           LF F   ICV I ++ Y Y N  KY +
Sbjct: 68  LFLFFVSICVVILVVRYRYLN--KYAR 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,045
Number of Sequences: 5004
Number of extensions: 24938
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)