Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7g07
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 33 0.15
08_02_0710 + 20275834-20276352,20276970-20277140,20277692-202777... 30 1.4
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 2.4
01_06_1034 + 33962813-33963802 29 3.1
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 4.1
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 29 4.1
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995... 28 5.5
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 27 9.6
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 27 9.6
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 9.6
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 275 AKFYNVIDFCKGLE-IAHDDILDCNWD 352
A+FYNV C +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330
>08_02_0710 +
20275834-20276352,20276970-20277140,20277692-20277745,
20277848-20277934
Length = 276
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 464 LMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTKQRKIYG 607
++ LN N++ + L T G RD+ K+E + + K K+R I G
Sbjct: 146 MVHLNAQNQAAVIGILYTIGTRDEFLQKLEPYIIEISKQEGKERVIIG 193
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 569 HVLKQIQFCRANHHARLQFEGAATRCFCCQ 480
H+LK++ C+ +H R QFE FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 404 WISACEK*FRLNGKLDRCPNCN 339
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 347 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 472
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>02_05_0975 +
33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 482 DNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTKQRKIYGHPRNVQERC 634
DN N ++ E + D + + S++ K TK KI+ P+NV E C
Sbjct: 569 DNDGNIANNISEEFDDDVV---LASLVHKSKSSKTKASKIHSSPKNVDESC 616
>03_02_0628 +
9957385-9957888,9957985-9958111,9958541-9958608,
9958695-9958772,9958885-9958949,9959130-9959196,
9959344-9959526,9959690-9959746,9959857-9959952,
9960061-9960219
Length = 467
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 386 FHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNK--SNALLHLQTEGE--RDDLRDKIE 553
+HK ++RD L + A K+ L + NK + TEG+ R +L DK
Sbjct: 196 YHKVVAERDAGKLLSSIAVKEKLESLCREFQRQNKMLKEECRRVSTEGQNMRMELSDKFN 255
Query: 554 SVLKHVK-KLNTKQRK 598
+ +K V KL+ ++ +
Sbjct: 256 NAIKDVSVKLDEQKNE 271
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 506 AATRCFCCQNLTASKFSTTPAWSRTMRPTS*DRVWISACE 387
AA RCF Q T+S ++P WS RP + + + C+
Sbjct: 49 AAARCFATQPATSSLRDSSPNWSN--RPPK-ETILLDGCD 85
>03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/87 (21%), Positives = 36/87 (41%)
Frame = +2
Query: 353 SDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERD 532
S + L E IF + D +++ T G R + + + L +T + +
Sbjct: 1049 SGSIKELEEYIFALEDGGHDSDTIARNSPTTDGTYSGHKRRSVKSPTKKTLKHKTSHKEE 1108
Query: 533 DLRDKIESVLKHVKKLNTKQRKIYGHP 613
+ + S+LK KL + ++ I G P
Sbjct: 1109 EQDELAGSILKLANKLASVEQSIVGDP 1135
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 203 IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQV 364
++ W +F+ + K R + D + K + +I+ + HDDI+ C + S ++
Sbjct: 2833 VMIWHAFRGKSADKKSRNANYDLSTKDHVIIESPYHILCGHDDIITCLFVSTEL 2886
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,244
Number of Sequences: 37544
Number of extensions: 246392
Number of successful extensions: 684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -