Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7g06
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1071 + 24110007-24110492                                         29   3.2  
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038     28   7.4  
05_01_0476 - 3896314-3898725                                           27   9.8  

>08_02_1071 + 24110007-24110492
          Length = 161

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 617 VEISISPSSFL-CVRLPLIKIATVLLNAHSPIPALL 513
           + + +SPSS L C+R PL+  A + ++ HS  P  L
Sbjct: 43  IAVIVSPSSSLACLRAPLVHDALLCIHDHSTAPHAL 78


>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
          Length = 202

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 554 TVLLNAHSPIPALLLFITVFCVVRVLI 474
           TV+L+AH P+  +LLF+ V  +V V +
Sbjct: 149 TVILDAHPPLITVLLFVPVTVLVIVAV 175


>05_01_0476 - 3896314-3898725
          Length = 803

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 406 QTGPDPWHYDNNVVSIEENLPPDIKTLTTQKTV 504
           QT P+ W   N  V    N P D   +T+   V
Sbjct: 339 QTSPEDWEVGNRTVGCSRNTPLDCGNMTSSTDV 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,739,163
Number of Sequences: 37544
Number of extensions: 274508
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)