Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7g06
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z82264-10|CAB54196.1|  384|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    27   8.7  

>Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical
           protein F22B8.5 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 301 FIIVL*YLFHLFTMYKAIVYSIIVHFQLL-FTHVSCNMTTHDKCDNYNERLNVLSI 137
           FI+V   LFH+   + +  Y ++V+FQL+ F   SC    H     YN  L   S+
Sbjct: 30  FILVYLTLFHIKRQFGSYKY-LLVNFQLVGFCFASCEYLFHTFLHLYNASLIYFSL 84


>Z82264-10|CAB54196.1|  384|Caenorhabditis elegans Hypothetical
           protein C49C3.10 protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 645 PSFIVEFHXSRNFNISFIFSLCSATFNQDSNRSSKRPFSDPCTSFVY 505
           P  + EF+  R +    + +L ++TFN+  +R+ K  F D C    Y
Sbjct: 94  PLKMTEFYIVREYMHGTMKNLSASTFNEGGHRTVKSIFFDICRGVQY 140


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = -3

Query: 388 YQSNYKILSNIEGTNSL*CLKIFKVKRCVFIIVL*YLFHLFTMYKAIVYSIIVHFQLLFT 209
           Y   Y +L++I     L  L IFK++ C F   + +L+ ++  +  I+ S++ +  +   
Sbjct: 18  YSQFYTLLTSIFSVFPLLYLIIFKLRVCTFNDNIKFLYIVY--FTQILISVLNNCVVFAH 75

Query: 208 HVSCNMTTHDKCD 170
           HV        KCD
Sbjct: 76  HVVIPFLAVSKCD 88


>Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical
           protein C33D9.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 255 KLLFIQSLYIFSYCLLM 205
           KL+FI S YIF+YC+LM
Sbjct: 102 KLIFI-STYIFNYCILM 117


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 259  YKAIVYSIIVHFQLLFTHVSCNMTTHDKC 173
            Y  +   +I H + L+T V+C ++ H KC
Sbjct: 1494 YCEVCNQLIWHHEKLYTCVACRISCHKKC 1522


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,252,165
Number of Sequences: 27780
Number of extensions: 293542
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)