Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f19
         (496 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0XYM6 Cluster: Putative uncharacterized protein; n=2; ...    34   2.0  
UniRef50_UPI00001627D1 Cluster: F-box family protein; n=1; Arabi...    33   2.7  
UniRef50_P04786 Cluster: DNA topoisomerase 1; n=35; Ascomycota|R...    33   2.7  
UniRef50_P30181 Cluster: DNA topoisomerase 1; n=17; Magnoliophyt...    33   4.6  

>UniRef50_A0XYM6 Cluster: Putative uncharacterized protein; n=2;
           Alteromonadales|Rep: Putative uncharacterized protein -
           Alteromonadales bacterium TW-7
          Length = 888

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +2

Query: 188 CMVGAVLLSCASRSAILLEKHSSRVACAASIVASCDMLLNPSIPTSQLMSVQKLAGS*LL 367
           C+V A+L+ CA  +  L ++ +  V   A+I  +  MLL+ S  T  L ++Q L  S L+
Sbjct: 510 CVVAAILIKCAQHNTTLFQRFTYWVGANANITLAITMLLSDSGLTIAL-AIQVLLISVLI 568

Query: 368 K 370
           K
Sbjct: 569 K 569


>UniRef50_UPI00001627D1 Cluster: F-box family protein; n=1;
           Arabidopsis thaliana|Rep: F-box family protein -
           Arabidopsis thaliana
          Length = 415

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = -2

Query: 327 CEVGIEGLSNMSQLATIEAAQATLEE-----CFSRRMADLEAQLNNTAPTIQ 187
           CEVGI+G  NM ++  I+  +  LEE     CF R M +LE    NT+  I+
Sbjct: 340 CEVGIDG-GNMVKVVEIQEYKGRLEELNQVKCFLREMENLEEVKVNTSDEIE 390


>UniRef50_P04786 Cluster: DNA topoisomerase 1; n=35; Ascomycota|Rep:
           DNA topoisomerase 1 - Saccharomyces cerevisiae (Baker's
           yeast)
          Length = 769

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 236 EWLTLKHNSTILPPPY 189
           +W+TLKHN  I PPPY
Sbjct: 144 KWVTLKHNGVIFPPPY 159


>UniRef50_P30181 Cluster: DNA topoisomerase 1; n=17;
           Magnoliophyta|Rep: DNA topoisomerase 1 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 916

 Score = 32.7 bits (71), Expect = 4.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 257 SKNVSQEEWLTLKHNSTILPPPY 189
           S    Q++W TL HN  I PPPY
Sbjct: 363 SSGDGQKKWTTLVHNGVIFPPPY 385


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,745,051
Number of Sequences: 1657284
Number of extensions: 5224900
Number of successful extensions: 10569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10569
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)