Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f19
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    30   0.22 
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    28   0.89 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.3  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 257 SKNVSQ-EEWLTLKHNSTILPPPY 189
           S+N+   ++W TL+HN  I  PPY
Sbjct: 186 SENIDDTQKWTTLEHNGVIFAPPY 209


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = +2

Query: 227 SAILLEKHSSRVACAASIVASCDMLLNPSIPTSQLMSVQKLAGS*LLKLSFHKNCHKHLC 406
           S  + + H+SRVA   S+  +    L+  IPT +L+   K+  S LL+ +  ++      
Sbjct: 303 SEFIKDNHTSRVAILISMKLAFQYQLSQVIPTLKLLLQSKVYDSVLLE-ALRQSSTLGPV 361

Query: 407 GLLMFSFKELLXKMSKILLN 466
             L+     LL  +SK+LL+
Sbjct: 362 KQLIADDSCLLNNLSKLLLD 381


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 336 LISCEVGIEGLSNMSQLATIEAAQATLEECFSRRMADLEAQLNNTAPTIQFV 181
           L+   VG+   +  + +A     QAT  +    R+AD  A+L   A  + F+
Sbjct: 411 LLVTAVGVNSFNGRTTMAMRTEGQATPLQLRLSRVADAIAKLGGAASALLFI 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,591
Number of Sequences: 5004
Number of extensions: 24090
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)