Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f19
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    29   2.7  
10_08_0753 + 20324011-20324113,20324210-20324231,20324344-203244...    27   6.3  
01_01_0144 - 1316626-1316658,1317580-1318863                           27   8.3  

>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 239 EEWLTLKHNSTILPPPY 189
           ++W TL H+  I PPPY
Sbjct: 372 QKWTTLVHSGVIFPPPY 388


>10_08_0753 +
           20324011-20324113,20324210-20324231,20324344-20324400,
           20324704-20324785,20324903-20324998,20325265-20325389,
           20325484-20325502,20325598-20325744
          Length = 216

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 351 ASFCTLISCEVGIEGLSNMSQL 286
           A  C+L++C VG E LS  SQL
Sbjct: 130 ACICSLVACIVGSEELSEASQL 151


>01_01_0144 - 1316626-1316658,1317580-1318863
          Length = 438

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 272 ASIVASCDML-LNPSIPTSQLMSVQKLAGS*LLKLSFHKNCHKHLCGLLMF 421
           A IV SC    +NP++P + + +  K  G  +     H     HLCG   F
Sbjct: 159 ADIVTSCSRRGINPALPKATIFARVKNGGEWIQSSIPHLPLPPHLCGPTYF 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,403,803
Number of Sequences: 37544
Number of extensions: 142790
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)