Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f19
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 27   8.5  
SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)                 27   8.5  
SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)                  27   8.5  
SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 27   8.5  
SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)              27   8.5  
SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)              27   8.5  

>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1786

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -2

Query: 345  FCTLISCEVGIEGLSNMSQLATIEAAQATLEECFSRRMADLEAQLNNTAPTIQFVFSFQS 166
            FC L SC +     +N+  L  +      ++   + R+   E+  N TA T++++ S  +
Sbjct: 1650 FCILCSCGIVFVVAANVRLLLVVRRHHRAIQVQNASRLTRTESLENRTADTLRYMKSLVT 1709

Query: 165  YA 160
             A
Sbjct: 1710 IA 1711


>SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 239 EEWLTLKHNSTILPPPYSLFLVFNHMQS 156
           E+   L+H++ IL  PY L+  F H+ +
Sbjct: 559 EKIKNLRHSTGILTSPYDLYATFKHLMT 586


>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 432

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +2

Query: 188 CMVGAVLLSCASRSAILLEKHSSRVACAASIVASCDMLLNPSI 316
           C+ GA++  C SR  I + KH + +  + + +++ D+ +  ++
Sbjct: 135 CVPGAIVCYCYSRVFIAVRKHKASITRSRTSISAEDIKITKTL 177


>SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)
          Length = 271

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +2

Query: 188 CMVGAVLLSCASRSAILLEKHSSRVACAASIVASCDMLLNPSI 316
           C+ GA++  C SR  I + KH + +  + + +++ D+ +  ++
Sbjct: 197 CVPGAIVCYCYSRVFIAVRKHKASITRSRTSISAEDIKITKTL 239


>SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)
          Length = 276

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +2

Query: 188 CMVGAVLLSCASRSAILLEKHSSRVACAASIVASCDMLLNPSI 316
           C+ GA++  C SR  I + KH + +  + + +++ D+ +  ++
Sbjct: 142 CVPGAIVCYCYSRVFIAVRKHKASITRSRTSISAEDIKITKTL 184


>SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 269

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +2

Query: 188 CMVGAVLLSCASRSAILLEKHSSRVACAASIVASCDMLLNPSI 316
           C+ GA++  C SR  I + KH + +  + + +++ D+ +  ++
Sbjct: 135 CVPGAIVCYCYSRVFIAVRKHKASITRSRTSISAEDIKITKTL 177


>SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)
          Length = 331

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +2

Query: 188 CMVGAVLLSCASRSAILLEKHSSRVACAASIVASCDMLLNPSI 316
           C+ GA++  C SR  I + KH + +  + + +++ D+ +  ++
Sbjct: 197 CVPGAIVCYCYSRVFIAVRKHKASITRSRTSISAEDIKITKTL 239


>SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)
          Length = 521

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +2

Query: 188 CMVGAVLLSCASRSAILLEKHSSRVACAASIVASCDMLLNPSI 316
           C+ GA++  C SR  I + KH + +  + + +++ D+ +  ++
Sbjct: 197 CVPGAIVCYCYSRVFIAVRKHKASITRSRTSISAEDIKITKTL 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,258,503
Number of Sequences: 59808
Number of extensions: 185411
Number of successful extensions: 358
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)