Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f14
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   1.1  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   2.6  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   2.6  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    24   6.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    24   6.0  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    24   6.0  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +2

Query: 2   SQRKQLLYAIIIVKITTKCFNVHESSKVFYFSVYNLESILQQQYTQLQC 148
           + +++LLY  +I  I T C ++       Y  +   ES      ++++C
Sbjct: 721 ASKEELLYVCLIYTIWTHCTDMDSMDNCVYLCIQKFESYGWGASSEMEC 769


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 44   ITTKCFNVHESSKVFYFSVYNLESILQQQYTQLQCSKVPQLIVFLSSMQL 193
            +T+ C N+ E+S   +     +E ++Q +YT L C    +++ F SS  L
Sbjct: 954  VTSNCVNLSENSIRAWLVSSAVERLIQNEYTTL-C----EMVDFFSSFSL 998


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 152 SSTEAEYIAAAECFLNCIQRSRKL 81
           +S E   +A +EC L C +RS K+
Sbjct: 131 ASEEERQLALSECHLRCAERSLKV 154


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 19/81 (23%), Positives = 31/81 (38%)
 Frame = +2

Query: 35  IVKITTKCFNVHESSKVFYFSVYNLESILQQQYTQLQCSKVPQLIVFLSSMQLVHHSSXS 214
           I+K      NV    + FY S     S+ + Q + L  SK+   +VF ++     +   S
Sbjct: 561 ILKFRCDFENVRTMDR-FYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRFEYEKES 619

Query: 215 QNQKYFVSCQDHQRNQNHKNL 277
           +       C +      HK L
Sbjct: 620 KRSDIVCICTNDANVDKHKFL 640


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 53  KCFNVHESSKVFYFSVYNLESI 118
           K   VHE  K  YF  YN +++
Sbjct: 25  KTLTVHEEGKFIYFHDYNKKNV 46


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 173 FLSSMQLVHHSSXSQNQKYFVSCQDHQRNQNH 268
           +L + Q  HHS  S +     S + H++  NH
Sbjct: 87  YLETFQSKHHSPQSFSASVITSMEIHEQLANH 118


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +1

Query: 130 IYSASVLESATTDCFLELHAIGPPFIXITKPEVLRLVSGSPAKSESQK 273
           I S SV+ SA TD         PPF+  TKP V +      A SE+ K
Sbjct: 658 ISSRSVI-SAATDSKPSTRT-SPPFVNNTKPIVAKSPVTVTASSETNK 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,825
Number of Sequences: 5004
Number of extensions: 22254
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)