Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f14
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.021
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   2.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   2.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   4.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   4.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   4.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.021
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
 Frame = +2

Query: 98  VYNLESILQQQY---TQLQCSKVPQLIVFLSSMQLVHH----SSXSQNQK---YFVSCQD 247
           ++ ++ +LQQ     TQLQ S + Q  ++L   Q  HH    S  + NQ+   YF S +D
Sbjct: 71  IHQMQQLLQQHILSPTQLQ-SFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKD 129

Query: 248 HQ 253
           HQ
Sbjct: 130 HQ 131


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 275 LSIYCHLYC 301
           L IYC LYC
Sbjct: 209 LGIYCRLYC 217


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = -1

Query: 308 IHYSKGDNILRGFCDSDFAGDPD-TRRSTSGFVIXMNGG--PIAWSSRKQSVV--ALSST 144
           I Y+  DN  +    S FA DP  T  + +G    +  G   +A S   Q++   ALSS 
Sbjct: 212 IIYNNSDNSFQRLTSSTFASDPRYTTFTINGESFTLQSGIFGMALSPLTQNLYYSALSSH 271

Query: 143 EAEYI 129
              Y+
Sbjct: 272 NLNYV 276


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 NQNHKNLSIYCHLYCNEY 310
           N N+ N + Y  LYCN Y
Sbjct: 88  NYNYNNNN-YKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 NQNHKNLSIYCHLYCNEY 310
           N N+ N + Y  LYCN Y
Sbjct: 88  NYNYNNNN-YKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 NQNHKNLSIYCHLYCNEY 310
           N N+ N + Y  LYCN Y
Sbjct: 88  NYNYNNNN-YKKLYCNNY 104


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/38 (21%), Positives = 19/38 (50%)
 Frame = +1

Query: 121 AAAIYSASVLESATTDCFLELHAIGPPFIXITKPEVLR 234
           + A +   + E    +  + L+A   PF+ +  PE+++
Sbjct: 55  STAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIK 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,627
Number of Sequences: 438
Number of extensions: 1687
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)