Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7f12
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 301 2e-82
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 58 5e-09
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 6e-09
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 52 4e-07
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.28
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.66
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 4.6
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 301 bits (740), Expect = 2e-82
Identities = 150/202 (74%), Positives = 165/202 (81%)
Frame = +1
Query: 79 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 258
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 259 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 438
DEQDRCITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTA
Sbjct: 61 DEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTA 118
Query: 439 ALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQT 618
ALRVTDGAL QTETVLRQAIAERIKP+LFMNKMDR YQT
Sbjct: 119 ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQT 178
Query: 619 FQRIVENVNVIIATYNDDGGPM 684
F RIVE++NVIIATY+D+ GPM
Sbjct: 179 FARIVESINVIIATYSDEDGPM 200
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 58.4 bits (135), Expect = 5e-09
Identities = 43/153 (28%), Positives = 68/153 (44%)
Frame = +1
Query: 115 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 294
D+ + R +I+H D GK+TLT+ L+ G I A A ++ IK
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51
Query: 295 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 474
A S F E+E + + + + + IN++D+PGH DF+ + L D +
Sbjct: 52 ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110
Query: 475 XXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 573
QTE ++ I I+F+NKMDR
Sbjct: 111 DVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 48.8 bits (111), Expect(2) = 6e-09
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +1
Query: 130 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 291
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993
Score = 29.1 bits (62), Expect(2) = 6e-09
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 394 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMD 570
+ + GHVDFS EV+ +L G + QT + A + I +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/78 (37%), Positives = 39/78 (50%)
Frame = +1
Query: 427 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXX 606
+V+ A+R+ DGAL QT VLRQA E I+P L +NK+DR
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSE 152
Query: 607 XYQTFQRIVENVNVIIAT 660
+ Q+I+E VN I T
Sbjct: 153 AFIHLQQILEQVNAITGT 170
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/78 (33%), Positives = 39/78 (50%)
Frame = +1
Query: 421 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXX 600
+ +V+ A+R+ DGAL QT VLRQA E I+P L +NK+DR
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSP 80
Query: 601 XXXYQTFQRIVENVNVII 654
+ Q+I+E V+ +
Sbjct: 81 SEAFIHLQQILEQVSTAV 98
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +1
Query: 364 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 543
K G I ID+PGH F+S VTD + QT +R A+ ++
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130
Query: 544 PILFMNKMDR 573
I+ +NK+D+
Sbjct: 131 LIVAINKIDK 140
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 112 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 207
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +1
Query: 76 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 255
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 256 K 258
+
Sbjct: 172 R 172
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +1
Query: 502 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 669
TE +L+ A+ E + + +NK+DR Y + +++ VN +++ +++
Sbjct: 170 TERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSE 225
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 139 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 240
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 385 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNK 564
I +D+PGH F++ +VTD + QT+ + A A + I +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199
Query: 565 MDR 573
+D+
Sbjct: 200 IDK 202
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -2
Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 327
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 326 FSSSSK 309
SS K
Sbjct: 672 MGSSDK 677
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 458 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 336
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 515 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 375
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 497 THTPDTQSTTTRAPSVTRSAAVTSEEKST 411
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 504 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 412
S Y+ + HT+N+H+ + + +T C+C ++ ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,484,340
Number of Sequences: 59808
Number of extensions: 433529
Number of successful extensions: 1518
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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