Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7f08
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 242 1e-64
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 242 1e-64
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 126 2e-29
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 118 4e-27
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 55 4e-08
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 44 8e-05
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 35 0.048
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 34 0.084
Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical pr... 32 0.45
AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical ... 32 0.45
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 31 1.0
U64858-4|AAB18282.2| 151|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 30 1.8
AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical ... 29 2.4
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 3.2
Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical pr... 28 5.5
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 7.3
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 7.3
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 7.3
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 7.3
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 7.3
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 7.3
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 27 9.6
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 27 9.6
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 27 9.6
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 27 9.6
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 27 9.6
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 242 bits (593), Expect = 1e-64
Identities = 117/147 (79%), Positives = 131/147 (89%)
Frame = +3
Query: 204 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALN 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+N
Sbjct: 7 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 66
Query: 384 LEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKS 563
L+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +LGRVVDALGNPIDGKGPI
Sbjct: 67 LDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANAR 126
Query: 564 RMRVGIKAPGIIPRVSVREPMQTGIKA 644
R RV +KAPGIIPR+SVREPM TG+KA
Sbjct: 127 RSRVEVKAPGIIPRLSVREPMVTGVKA 153
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 242 bits (593), Expect = 1e-64
Identities = 117/147 (79%), Positives = 131/147 (89%)
Frame = +3
Query: 204 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALN 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 384 LEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKS 563
L+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +LGRVVDALGNPIDGKGPI
Sbjct: 94 LDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANAR 153
Query: 564 RMRVGIKAPGIIPRVSVREPMQTGIKA 644
R RV +KAPGIIPR+SVREPM TG+KA
Sbjct: 154 RSRVEVKAPGIIPRLSVREPMVTGVKA 180
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 126 bits (303), Expect = 2e-29
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +3
Query: 204 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALN 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 384 LEPDNVGVVVFGNDKL 431
L+ DNVGVVVFGNDK+
Sbjct: 94 LDVDNVGVVVFGNDKI 109
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 118 bits (284), Expect = 4e-27
Identities = 57/73 (78%), Positives = 64/73 (87%)
Frame = +3
Query: 204 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALN 383
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 384 LEPDNVGVVVFGN 422
L+ DNVGVVV GN
Sbjct: 94 LDVDNVGVVVLGN 106
Score = 71.3 bits (167), Expect = 6e-13
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Frame = +3
Query: 219 ILEERILGAAPKADLEETGRVLSIGDGIARVYG--LKNIQAEEMVEFSSGLK----GMAL 380
+L +RI+ A A + + + G+A G + I E ++ +G+ G L
Sbjct: 1 MLSKRIVTALNTAVKVQNAGIATTARGMAGASGSEVSKILEERILGTETGINLEETGKVL 60
Query: 381 NLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTK 560
++ D + V +G K I+ ++V+ I + + + V LGNPIDGKGPI
Sbjct: 61 SIG-DGIARV-YGL-KNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVLGNPIDGKGPIANA 117
Query: 561 SRMRVGIKAPGIIPRVSVREPMQTGIKA 644
R RV +KAPGIIPR+SVREPM TG+KA
Sbjct: 118 RRSRVEVKAPGIIPRLSVREPMVTGVKA 145
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/79 (34%), Positives = 47/79 (59%)
Frame = +3
Query: 405 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 584
+ + G + L++ G V TG + +PVG + LGR+++ +G PID +GPI +K+ + +
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAE 178
Query: 585 APGIIPRVSVREPMQTGIK 641
AP + +E + TGIK
Sbjct: 179 APEFVEMSVEQEILVTGIK 197
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 44.4 bits (100), Expect = 8e-05
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 369 GMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKG 545
G L + + V VF G + + I + TG I+ PV E +LGR+ + G PID
Sbjct: 66 GQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGP 125
Query: 546 PIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKA 644
P+ + + + + R+ E +QTGI A
Sbjct: 126 PVLAEDFLDINGQPINPWSRIYPEEMIQTGISA 158
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 35.1 bits (77), Expect = 0.048
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 459 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGI 638
TG I PV +LGR+ + G PID P+ + + + + R+ E +QTGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 639 KA 644
A
Sbjct: 169 SA 170
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 34.3 bits (75), Expect = 0.084
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 363 LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPI 533
L G + LE D + V+ + GD V RTG + V +G I+G + D + P+
Sbjct: 39 LVGEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPL 95
>Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical
protein T19C9.5 protein.
Length = 212
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 584 LNADPHTGFRVDWSLAVNRVTQSVYYTPKDLLSDGNVYDSTSTLDN--ISFLDKLVITKY 411
+N D H + + A NR+ Q +Y K + G +Y+S +D+ I++ +L+I KY
Sbjct: 117 INKDTHDALKSEAKAAKNRLRQMLYSKSKSI---GCIYESCDKIDSKGINYNTRLLICKY 173
>AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical
protein F08E10.7 protein.
Length = 212
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -2
Query: 584 LNADPHTGFRVDWSLAVNRVTQSVYYTPKDLLSDGNVYDSTSTLDN--ISFLDKLVITKY 411
+N D H + + NR+ Q +Y K + G +Y+S +D+ I++ +LVI KY
Sbjct: 117 INKDTHNALKSEEKATKNRLRQMLYSKSKSI---GCIYESCDKIDSKGINYNTRLVICKY 173
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 309 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 485
+ GL +Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 486 GEQILGR-VVDAL 521
++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 309 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 485
+ GL +Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 486 GEQILGR-VVDAL 521
++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703
>U64858-4|AAB18282.2| 151|Caenorhabditis elegans Hypothetical
protein C16D9.3 protein.
Length = 151
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 348 PPSPQPGCSSSHKHERYHHQCSRHDQSLLD 259
PP Q C ER H C R+DQS+++
Sbjct: 96 PPGSQLKCHFDKSRERLHANCYRYDQSVVN 125
>Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical
protein T15D6.9 protein.
Length = 407
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 348 PPSPQPGCSSSHKHERYHHQCSRHDQSLLD 259
PP Q C H +Y+ C R+DQS+++
Sbjct: 285 PPGSQSICIFLHDWNKYYADCFRYDQSIIN 314
>AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical
protein T24C4.2 protein.
Length = 423
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -3
Query: 382 LRAIPLRPEENSTISSAWMFFKP*TRAIPSPMLKTRPVSSRSALGAAPRILS 227
+R IPLRP +NS F++ + SP++ S LGAA R+L+
Sbjct: 352 VRPIPLRPSQNSA------FYQMLNSSSTSPIIAVTKAEVDSVLGAASRLLN 397
>AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical
protein F41B4.1 protein.
Length = 342
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 357 RRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDQ 256
R PP P P + SHK+E SR S L++
Sbjct: 54 RELPPPPPPRKTPSHKYEEMRRSLSRGPSSTLER 87
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -2
Query: 587 RLNADPHTGFRVDWSLAVNRVTQSVYYTPKDLLSDGNVYDS---TSTLDN-ISFLDKLVI 420
R ++ P+ DW++ + + ++ +Y+T LL+ D T T +N F+ K V
Sbjct: 82 RTDSIPNANRHADWAIQIKKPSKYLYHTSFALLAAFAHRDQIIVTLTSENQFKFVFKTVY 141
Query: 419 TKYYHTH 399
+YY H
Sbjct: 142 CRYYDCH 148
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 29.1 bits (62), Expect = 3.2
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 8/160 (5%)
Frame = -3
Query: 673 TTTNGTRESTALIPVCIGSRTDTRGMIPGALMPTLIRDFVSIGP---LPSIGLPKASTTR 503
TTT+ +T+ P + T T P P+ ++ + P + S +P++STT
Sbjct: 175 TTTSTITPTTSADP----TSTITTSTTPNPSSPSTVQSTTTAEPTSTITSTTVPESSTTS 230
Query: 502 PRICSPTG--TSTIAPVRXXXXXXXXXXXXXXXXXXXXSGSKLRAIPLRPEENSTISSAW 329
+ T TSTI S + I L + STI+S
Sbjct: 231 VVQSTTTAEPTSTITSTTVPESSTSLLTSTLASTTTLIPTSTMSTITLTSDRTSTITSTG 290
Query: 328 MFFKP*TRAIPSPMLKT---RPVSSRSALGAAPRILSSRM 218
P T +PS T +P S +A + +L+S +
Sbjct: 291 SSNPPSTSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNL 330
>Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical
protein C15C8.3 protein.
Length = 428
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 392 RFQVKGHSLEA*GELHHLLSLDVLQAINTSDTITNAQDTTSLF*ISLGRGSKD-PLFEDG 216
R KG E E + LLS LQ ++S + + +D + ISLG +++ LF D
Sbjct: 32 RMNAKGKLAEYEKERNELLSKKSLQLASSSSPVIDYEDMAYMVQISLGSPAQNFVLFIDS 91
Query: 215 GDLGSFV 195
G +V
Sbjct: 92 GSSNLWV 98
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 277 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 101
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 190 PPTKLPRSPPSSKRGSLEPRPR 255
PP LP PPS ++ LEP+ R
Sbjct: 819 PPPPLPPPPPSVEKKKLEPQDR 840
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 321 KNIQAEEMVEFSSG-LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGA-IVDVPVGEQ 494
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 442 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 498
Query: 495 ILGRVVDALGNPIDGKGPIDTKSR 566
+ R+ + GN + GP SR
Sbjct: 499 CILRIRNPWGNEQEWNGPWSDNSR 522
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 321 KNIQAEEMVEFSSG-LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGA-IVDVPVGEQ 494
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 467 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 523
Query: 495 ILGRVVDALGNPIDGKGPIDTKSR 566
+ R+ + GN + GP SR
Sbjct: 524 CILRIRNPWGNEQEWNGPWSDNSR 547
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 321 KNIQAEEMVEFSSG-LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGA-IVDVPVGEQ 494
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 488 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 544
Query: 495 ILGRVVDALGNPIDGKGPIDTKSR 566
+ R+ + GN + GP SR
Sbjct: 545 CILRIRNPWGNEQEWNGPWSDNSR 568
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 190 PPTKLPRSPPSSKRGSLEPRPR 255
PP LP PPS ++ LEP+ R
Sbjct: 819 PPPPLPPPPPSVEKKKLEPQDR 840
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,915
Number of Sequences: 27780
Number of extensions: 347524
Number of successful extensions: 1217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -