Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f06
         (211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    24   2.4  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    22   9.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    22   9.6  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    22   9.6  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 83   KIGEFKFGEDTFTLXYVLGDEQPVRFVAKDIASSLKY 193
            +I EF+  +  F L  +  DEQ +R V  D   S  Y
Sbjct: 1232 RIVEFRRKQANFQLIVITHDEQFIRLVNSDAYCSYYY 1268


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 5   VCFALSSNRHASL 43
           +CF LS+N H SL
Sbjct: 111 ICFPLSNNAHDSL 123


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 200 NLHILNCWRCP 168
           +LH+L+C +CP
Sbjct: 217 HLHLLSCQKCP 227


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 134 LGDEQPVRFVAKDIASSLKYV 196
           L D+  VRF ++DI   ++YV
Sbjct: 467 LSDDLQVRFPSEDIPKFIEYV 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,551
Number of Sequences: 5004
Number of extensions: 6136
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)