Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f06
         (211 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45463| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   5.4  
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            25   9.4  

>SB_45463| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 347

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 151 CQICGQGHRQQFKICK 198
           C+ICG+G RQ   +C+
Sbjct: 202 CKICGKGFRQASTLCR 217


>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 184 TAGDVLGHKSDRLLIXEHVX*RER 113
           + G+V+GH +DRL    HV  +E+
Sbjct: 8   STGEVMGHSADRLASAFHVSRQEQ 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,679,009
Number of Sequences: 59808
Number of extensions: 47969
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 16,821,457
effective HSP length: 48
effective length of database: 13,950,673
effective search space used: 292964133
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)