Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f04
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    30   0.081
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   0.57 
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   1.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   1.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   2.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   3.1  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    22   3.4  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    24   4.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    24   4.0  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    24   5.3  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    23   7.1  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    23   7.1  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        23   7.1  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    23   7.1  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    23   9.3  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    23   9.3  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.081
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 120 KKFIINHNHEQVDETNKQEVVDKTDATTYNS 28
           KKF++NH+   +D+ +    V   D T Y++
Sbjct: 183 KKFVVNHSETDIDKNDNHVSVQTEDGTIYHA 213


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 0.57
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -3

Query: 213 VKYHMPLHYQCDINADKNV-VNAYDAIDVDPNKKFIINHNHEQVDETNKQEVVDKTDATT 37
           VKYH P         ++ V  N YD +  +PN   II    +  DE N  + ++  D   
Sbjct: 198 VKYH-PTEVHPSWTVEEPVHYNTYDGVVNEPNSSVIIEELDDDYDELN--DPMNNNDTPI 254

Query: 36  YNS 28
            NS
Sbjct: 255 TNS 257


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 118 FVGVNIDSVIRIYNVFICVNVTLIM 192
           F  +N D+ I IY+ F+C +  LIM
Sbjct: 330 FPTLNPDAYIYIYSYFLCKDTVLIM 354


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -3

Query: 255  ETFNMDSSNCIKIDVKYHMPLHYQCDINADKNVVNAYDAIDVDPNKKFIINHNHEQVDET 76
            ET+ M+ +N     VK    + YQ +I+     V  +  ++VDP+K    +     +D T
Sbjct: 839  ETYQMEITN-----VKRFKLIIYQRNIHTGLETVYGHATLEVDPDKLKQGHGKDVWLDIT 893

Query: 75   NKQEVV 58
            NK +++
Sbjct: 894  NKGQIL 899


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 41  VASVLSTTSCLFVSSTCS*L*LIINFLLGSTSIASYAFTTFLS 169
           + S ++++S +F+SS  S L    +++  +T+  S  FTT ++
Sbjct: 593 IVSSINSSSSVFISSVSSSLQYSSSYVTETTTSGSVGFTTTIA 635


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  FYDARIVCCCVSFIDDFLFVCFIDLFVIM 102
           F+  +I CC +  +DD+ +     +F+I+
Sbjct: 201 FFVFQIFCCVLWCLDDYWYFSLFSMFMII 229


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 22.2 bits (45), Expect(2) = 3.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 204 HMPLHYQCDINADKNVVNAYDAI 136
           H+ L Y+C  N+D   +  Y  +
Sbjct: 211 HVILSYECSTNSDTPEITQYQEV 233



 Score = 20.6 bits (41), Expect(2) = 3.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 111 IINHNHEQVDETNKQEVVDKTDATT 37
           +I     +VD  + Q VVD+   T+
Sbjct: 269 VIKEKSNEVDHKDSQHVVDEVAQTS 293


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 46  VSFIDDFLFVCFIDLFVIMINYKFFVGV 129
           + F+ +F   C I LFVI ++ K  VGV
Sbjct: 50  LGFLVEFFIFCLIPLFVIYVSSK--VGV 75


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 177 INADKNVVNAYDAIDVDPNK 118
           +  +K++++   A D+DPNK
Sbjct: 204 VQVNKSIISTIGAFDLDPNK 223


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -3

Query: 198 PLHYQCDINADKNVVNAYDAIDVDPNKK---FIINHNHEQVDETNKQEVVDKTDATTYNS 28
           PL +      +K   +  D + +  N +    + N NH++V      ++ DK++ T Y  
Sbjct: 169 PLAFVLVDQTEKFAASHPDRLQIKKNARVTRLLTNPNHDKVFGVEYMDLSDKSNHTVYGP 228

Query: 27  CII 19
            ++
Sbjct: 229 VVL 231


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 64  FLFVCF--IDLFVIMINYKFFVGVNIDSVI 147
           FLFV    +DL V+++NYK  + V + S++
Sbjct: 104 FLFVIGMEVDLRVLVLNYKVTLLVTVFSIV 133


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 141 AIDVDPNKKFIINHNHEQVDETNKQEVVDKTD 46
           ++DV P     +N N E +  TN + VVD +D
Sbjct: 623 SVDVAPTPVEDVNVNLESISNTN-ESVVDLSD 653


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = -3

Query: 240 DSSNCIKIDVKYHMPLHYQCDINADKNVVNAYDAIDVDPNKK-------FIINHNHEQVD 82
           D ++   +D     PLH+ C +     +       ++ P++K        +I+ N+  V 
Sbjct: 26  DPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLMISINNRSVP 85

Query: 81  ETNKQEVVDKTD 46
           +   +E+++++D
Sbjct: 86  DNVIEELINRSD 97


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 117 KFIINHNHEQVDETNKQEVVDKTDATTYNSCI 22
           K+I + N   +D+  K E+  ++   +   CI
Sbjct: 572 KYIPSSNSSSIDDIQKDEIAQESVVRSLEECI 603


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 216 DVKYHMPLHYQCDINADKNV 157
           DVKYH+ ++YQ    + K V
Sbjct: 339 DVKYHLGMNYQRPTPSGKRV 358


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 33  CMLLRQFYRRLLVCLFHRLVRDY 101
           CM +  ++  LL C F R +R Y
Sbjct: 222 CMSIHPYFPLLLTCGFDRTLRIY 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,635
Number of Sequences: 5004
Number of extensions: 18371
Number of successful extensions: 67
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)