Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f04
         (293 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.5  
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)          27   2.0  
SB_16097| Best HMM Match : 7tm_1 (HMM E-Value=0.0082)                  27   3.5  
SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)                    26   4.6  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    26   4.6  
SB_26272| Best HMM Match : DDE (HMM E-Value=5.7e-33)                   26   6.0  
SB_15596| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)                  26   6.0  
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                25   8.0  
SB_27517| Best HMM Match : TolA (HMM E-Value=0.25)                     25   8.0  

>SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +1

Query: 34  VCCCVSFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM*RHMVFY 213
           V   +  I + + +  I   VI+I     + VN+  +  I +  I VNVT+I+   ++  
Sbjct: 225 VIITIIIIVNVIIITIIIFNVIIIIIVNVIIVNVIIITIIIDNVIIVNVTIIIDNVIIIT 284

Query: 214 IYFNTITTI 240
           I  N IT I
Sbjct: 285 IIINVITII 293


>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
          Length = 988

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +1

Query: 31  IVCCCVSFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM*RHMVF 210
           IV   V  I   + +    +FVI I     + +    VI I ++F+   V++I+      
Sbjct: 279 IVSIIVIAIASIIVIAIASIFVIAIACFSVIAIASIIVIAIASIFVIAIVSIIVIATASI 338

Query: 211 YIYFNTITTIHVKSFLI 261
            I   +I  I + SF++
Sbjct: 339 VIAIASIIVIAIASFIV 355


>SB_16097| Best HMM Match : 7tm_1 (HMM E-Value=0.0082)
          Length = 228

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 76  CFIDLFVIMINYKFFVGVNIDSVIRIYNVFICV 174
           CF+ LF++MI +  +  V I +V+R +   I V
Sbjct: 81  CFMILFLLMILFMIYAYVRIATVVRRHRKVIIV 113


>SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)
          Length = 345

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 26  QELYVVASVLSTTSCLFVSSTC 91
           QEL  + S LS T C  VS+ C
Sbjct: 87  QELAYIVSALSITVCFMVSAVC 108


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 107  IINFLLGSTSIASYAFTTFLSALMSH**CNGI 202
            +++F   S  IA YA T F+ ++MS   CNGI
Sbjct: 991  VMSFAFKSQLIA-YAMTVFVLSIMSFATCNGI 1021


>SB_26272| Best HMM Match : DDE (HMM E-Value=5.7e-33)
          Length = 312

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 264 CD*ETFNMDSSNCIKIDVKYHMPLHYQCDINADKNVVNAYD 142
           CD  TF  +     +  V+ +M    QC + AD  VV   D
Sbjct: 231 CDASTFLSNEEEIPRTYVRTYMTKQIQCQVGADVQVVGDDD 271


>SB_15596| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)
          Length = 502

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +1

Query: 88  LFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM 192
           +F +++N++F + V+IDS++   N+ +  +  LI+
Sbjct: 134 VFKLLVNFEFNLSVDIDSLVGEGNIVLTDHEYLIL 168


>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1357

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 96   HEQVDETNKQEVVDKTD 46
            H+ VDE NK+   DKTD
Sbjct: 952  HDDVDELNKEHNRDKTD 968


>SB_27517| Best HMM Match : TolA (HMM E-Value=0.25)
          Length = 492

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 98  ITNKSMKQTNKKSSIKLTQQHT 33
           IT KSM    KK SIK  +QH+
Sbjct: 138 ITKKSMHTKIKKKSIKADKQHS 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,051,298
Number of Sequences: 59808
Number of extensions: 116801
Number of successful extensions: 316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)