Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7f04
         (293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    32   0.062
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical ...    27   2.3  
AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine re...    27   2.3  
AY241927-1|AAO85276.1|  330|Caenorhabditis elegans beta-1,3-gala...    26   4.1  
AC024746-16|AAF60408.1|  330|Caenorhabditis elegans Squashed vul...    26   4.1  
Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U64853-2|AAB04975.2|  529|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine d...    26   5.4  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    25   7.1  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    25   7.1  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    25   7.1  
AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    25   7.1  
AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 73  VCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM*RHMV 207
           VC I    + INY    G  +     I+NV ICV ++L+    MV
Sbjct: 208 VCLIAAVYVFINYAIGDGCGLPKFFVIFNVLICVAISLLSVSPMV 252


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 40  CCVSFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFIC 171
           C   F +      F+D   +++NYK+F+        R Y +++C
Sbjct: 198 CIRHFFEQHYKHLFLDSRHLLLNYKYFLRYQEKQEERAYGLYVC 241


>Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical
           protein T02E1.6 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 64  FLFVCFIDLFVIMINYKFFVGVN--IDSVIRIYNVFICVNVTLIM 192
           FLF+  +   +I+I + FFV  N  I  ++   NV I + V LI+
Sbjct: 115 FLFLELVIAMMILITWSFFVENNEMIPIILCFVNVIILIIVVLIL 159


>AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical
           protein Y48C3A.11 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 23  MQELYVVASVLSTTSCLFVSSTCS*L*LIINFL 121
           M  +  ++S+L+ T+   +S +CS L L INFL
Sbjct: 41  MLTITTLSSMLNPTNMFLISMSCSQLALCINFL 73


>AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine
           receptor, class z protein4 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +1

Query: 88  LFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM*RHMVFYIYFNTITTIHVKSFLIT 264
           +F++ + + +FV + + SV  +    + + + +I+     F+  F  + +I+ KSF  T
Sbjct: 95  VFIVSLFFAYFVAITVTSVQNVLLFILALRLFMIL-----FFPNFKKVISINQKSFQAT 148


>AY241927-1|AAO85276.1|  330|Caenorhabditis elegans
           beta-1,3-galactosyltransferase protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 76  CFIDLFVIMINYKFFVGVNIDSVIRIYNVFI 168
           CF+  F     +KFF+  +IDS +RI  + I
Sbjct: 141 CFVHAFA-NFKFKFFLKTDIDSFVRITPLII 170


>AC024746-16|AAF60408.1|  330|Caenorhabditis elegans Squashed vulva
           protein 2 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 76  CFIDLFVIMINYKFFVGVNIDSVIRIYNVFI 168
           CF+  F     +KFF+  +IDS +RI  + I
Sbjct: 141 CFVHAFA-NFKFKFFLKTDIDSFVRITPLII 170


>Z81105-5|CAB03218.2|  331|Caenorhabditis elegans Hypothetical
           protein R05D7.5 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 28  RIVCCCV---SFIDDFLFVCFIDLFVIMINYKFFVGVNIDSVIRIYNVFICVNVTLIM 192
           R+ C C+   SF++  ++VC  + F  +    FFV   I +  +     IC  +  I+
Sbjct: 18  RLTCFCLLPASFVNRHIYVCIPNSFSPLPTGCFFVVTEISNTYQNRRHMICGAIVTIL 75


>Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC455.11 protein.
          Length = 278

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +1

Query: 61  DFLFVCFIDLFVIMINYKFFV--GV---NIDSVIRIYNVFICVNVTLIM*RHMVFYIYFN 225
           ++  +  +D+F  +I Y+F +  G+   N           I V  TL     + FY Y  
Sbjct: 64  NYFVLSTVDIFSDIIPYEFIITPGIIAYNFFEARSFLAAIISVERTLATTTPIYFYNYRK 123

Query: 226 TITTIHVKSFLIT 264
           TI+   +  FLIT
Sbjct: 124 TISNFPIYIFLIT 136


>U64853-2|AAB04975.2|  529|Caenorhabditis elegans Hypothetical
           protein K11G9.2 protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -3

Query: 183 CDINADKNVVNAY--DAIDVDPN-KKFIINHNHEQVDETNKQEVVDKTDATTYNSCII 19
           C+ N  + V + Y  D ++   N +K I+N      DE+ ++++VD    + YN+ ++
Sbjct: 333 CEENFKRRVESEYRGDVVENPENVQKNIMNFYTNYCDESEERKLVDYIGHSVYNAGVL 390


>U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine dna
           alkyltransferaseprotein 2 protein.
          Length = 274

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 126 PNKKFIINHNHEQVDETNKQEVVDKTDATTYNSCIIK 16
           P + F  +H H+ +DE   QEV ++  +  +    I+
Sbjct: 76  PRESFYSSHEHDPMDEVLLQEVKEEAHSLAFKGIPIE 112


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 225 IKIDVKYHMPLHYQCDINADKNVVNAYDAIDVDPN--KKFIINHNHEQVDETNKQEVVDK 52
           +K + KY+  + ++  I    N        D   +  ++F++NH+        K  V D+
Sbjct: 811 MKSETKYNYNMPHRAVIKESSNTTKVRVVYDASSHAIREFVVNHDESMEKIDPKDRVSDR 870

Query: 51  T 49
           T
Sbjct: 871 T 871


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 237 SSNCIKIDVKYHMPLHYQCDINADK 163
           +SNCI +  +Y++P   +C + A++
Sbjct: 356 NSNCIDVSSRYNLPPGRKCSVAANQ 380


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 237 SSNCIKIDVKYHMPLHYQCDINADK 163
           +SNCI +  +Y++P   +C + A++
Sbjct: 356 NSNCIDVSSRYNLPPGRKCSVAANQ 380


>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 121 VGVNIDSVIRIYNVFICVNVTLIM*RHMVFYIYFNTITT 237
           +GV  D+ I I  +FI V  TL+    ++F +Y     T
Sbjct: 18  IGVKCDNCILINYIFISVFATLVAFNLVLFTLYVYVFKT 56


>AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.3 protein.
          Length = 162

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 151 IYNVFICVNVTLIM*RHMVFYIYFNTITTI 240
           I ++F  + V   + R++ F+IYFN++ T+
Sbjct: 91  ISSIFALIFVLQDLKRYLRFHIYFNSVITL 120


>Z36238-5|CAA85277.1|  381|Caenorhabditis elegans Hypothetical
           protein R74.6 protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 156 VNAYDAIDVDPNKKFIINHNH-EQVDETNKQEVVDKTDATTYNSCII 19
           + AY  ID++PN+KF +     + +D       +D   A    + ++
Sbjct: 96  LGAYHTIDLEPNRKFTLQKTEWDSIDLERLNLALDPAQAADVAAVVL 142


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 177 INADKNVVNAYDAIDVDPNKKFIINHNHEQVDETNKQE 64
           +   +N  +  D   +DPNKK +I  +   +++ NK E
Sbjct: 780 VTTSENCEDIPDPSSIDPNKKTLIIFDDLMLEKQNKIE 817


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,518,494
Number of Sequences: 27780
Number of extensions: 103438
Number of successful extensions: 357
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)