Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e23
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   1.2  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   6.6  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    24   8.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   8.7  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 179 DGFCNATNALLNAQAPXLIECDPALGLLHIXSAGGDFVVXQACVSTYRDLVDDT 18
           DGF +AT     ++       D  LG+       G  V  QACVS YR  ++ T
Sbjct: 558 DGFLDAT---CPSKLTFSTSYDTDLGMHSFMIKPGGIVNYQACVSNYRSFINVT 608


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 186 GQLACSAGNHA 218
           G +ACSAGNHA
Sbjct: 163 GVIACSAGNHA 173


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 14  FPYRPPSLCTCSRMLXTRQNLRLRXKCEASPVRDRILSXPEP 139
           +P      C  +  L T   +RLR K      +DRI+S   P
Sbjct: 515 YPLTSSEFCDVANSLETLAIIRLRTKQRNGKPQDRIISLLVP 556


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 104  PVRDRILSXPEPVRLAKRWWRYK 172
            P+ +R     +PV  +K WW  K
Sbjct: 1332 PIPERAPLVNDPVNYSKNWWNVK 1354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,540
Number of Sequences: 5004
Number of extensions: 25141
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)