Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e23
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247...    27   4.9  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    27   6.5  
06_01_0799 - 5964410-5964565,5964709-5964750,5968762-5968803,596...    27   6.5  
03_05_1008 - 29644352-29645297,29645381-29645769                       27   6.5  
03_01_0106 - 839585-839614,839725-840825,840901-841122                 27   6.5  
08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054     27   8.6  
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    27   8.6  
03_04_0171 + 18001993-18001995,18002527-18002640,18002958-180031...    27   8.6  

>05_04_0312 -
           20123892-20124085,20124183-20124508,20124728-20124732,
           20125063-20125670,20125744-20125884,20126067-20126194,
           20126288-20126329,20126613-20126755
          Length = 528

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 32  SLCTCSRMLXTRQNLRLRXKCEASPVRD 115
           SLC C+     R   R+R +CE    RD
Sbjct: 18  SLCVCACSCFLRDGGRMRRRCEGGSARD 45


>11_06_0768 + 27129007-27129038,27129140-27129220,27129723-27130089,
            27130165-27130255,27130515-27130595,27130764-27131830,
            27132060-27132071,27132465-27133209,27133210-27135244,
            27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 131  PEPVRLAKRWWRYKNHPGRSTRLQ 202
            PEP +  KR + +K H G  +RL+
Sbjct: 1014 PEPDKQVKRQFEFKTHDGSDSRLE 1037


>06_01_0799 -
           5964410-5964565,5964709-5964750,5968762-5968803,
           5968903-5968998,5970549-5970630,5973820-5974001
          Length = 199

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 344 DAHMRINELEAPPLNFTXQHNRGVDCSLNRLPCVTDQQ 231
           D +MR  ELE   +    Q  + ++  L R+ C  DQQ
Sbjct: 86  DLNMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQ 123


>03_05_1008 - 29644352-29645297,29645381-29645769
          Length = 444

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 167 YKNHPGRSTRLQRWKSRXCLYTADPS-RTVTGSMNNL 274
           Y+N PG  TR+  + S   L   DP+ + +TG MN L
Sbjct: 103 YRNAPGVETRVSDFGSTSTLRYLDPNLKLLTGYMNVL 139


>03_01_0106 - 839585-839614,839725-840825,840901-841122
          Length = 450

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 125 SXPEPVRLAKRWWRYKNHPGRSTRLQRWKSRXCLYTADP 241
           S P+   +    W Y NH  R   ++RW S   L   +P
Sbjct: 227 SVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEP 265


>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
          Length = 995

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 30  QVSVRAHACLXHDKISACGXNVK----QAQCGIAFYQXRSL 140
           Q S+  HACL H  +S C  N++    +A CG+   Q  +L
Sbjct: 508 QGSISKHACLIHLDLSGCS-NIRVIQPEALCGLTKLQFLNL 547


>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 118 HSIXSGACAFSKALVALQKPSWQVNSLAALEITQXSLHC*SVTH 249
           +S  S   AFSK L  + KP+W V+SLA   +   S    S+T+
Sbjct: 136 NSKMSNLRAFSKGLPVV-KPAWVVDSLAENRLLSCSFSSPSLTN 178


>03_04_0171 +
           18001993-18001995,18002527-18002640,18002958-18003127,
           18003408-18003684
          Length = 187

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 269 CSLNRLPCVTDQQCRDXCVISSAASELTCQDGFCNATNALLNAQ 138
           C L+R P VT   CR    ++S++S  T     C A   L  A+
Sbjct: 131 CCLSRAPTVTSFPCR--ATVASSSSGATVVASSCGAAACLSGAR 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,687
Number of Sequences: 37544
Number of extensions: 194203
Number of successful extensions: 397
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)