Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e23
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.2  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)                27   8.7  
SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145 FSKALVALQKPSWQVNSLAALEIT-QXSLHC*SVTHGNRFNEQSTPRLC*XVKFNGGA 315
           F+K    ++     +N L AL I    S    S   G R N QSTP++    K +GG+
Sbjct: 6   FTKPTTKVEPKHLYMNKLIALTIILSTSFFTFSQVLGGRENSQSTPKVAEATKLSGGS 63


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -2

Query: 275 VDCSLNRLPCVTDQQCRDXCVISSAASELTCQDGFCNATNAL--LNAQAPXLIECDPALG 102
           ++  +  +PC     C +   +   A+ L     F N  +A+  +N+Q   L+E D   G
Sbjct: 733 LEVQVRLVPCFASSSCANAVAVKIGATVLNIHSRFANTEDAVVSVNSQEIALLEMDLGHG 792

Query: 101 LLH 93
             +
Sbjct: 793 FTY 795


>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 107 VRDRILSXPEPVRLAKRWWRYKNHPGRSTRLQ--RWKSR 217
           +R R +  P+P    + WW   +   R  R +  RWKSR
Sbjct: 805 LRQRFVRLPDPGNPYRSWWTVASDDVRRQRRRKPRWKSR 843


>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
          Length = 1303

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 251  PCVTDQQCRDXCVISSAASELTCQDGFC 168
            PC  D  CRD      A+ ++ C+DG C
Sbjct: 1162 PC-RDGSCRDAPFRDGASHDVACRDGSC 1188


>SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 305 LNFTXQHNRGVDCSLNRL 252
           LNFT Q   G  C+LNRL
Sbjct: 125 LNFTEQRKSGPKCALNRL 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,036
Number of Sequences: 59808
Number of extensions: 222442
Number of successful extensions: 461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)