Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e20
         (309 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   3.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    19   9.0  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           19   9.0  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 183 CGAIRRMGESDDCIVRLTKKD 245
           CG++R + E  DC    ++K+
Sbjct: 413 CGSLREIKEVSDCDSSESRKE 433


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 132 VXPATGRAADTSKMYVVCGAIRRM 203
           + P  G   DT++ Y+   +IRR+
Sbjct: 237 IFPYRGIMLDTARNYMSVESIRRV 260


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 105 ASVQLVIADVXPATGRAA 158
           ASV    A   P+TGR A
Sbjct: 114 ASVAAAFAPQGPSTGRGA 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,042
Number of Sequences: 336
Number of extensions: 1200
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5624413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)