Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e20
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    93   9e-21
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   1.1  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   1.5  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   3.4  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    24   5.9  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 93.1 bits (221), Expect = 9e-21
 Identities = 46/80 (57%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
 Frame = +3

Query: 18  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVXPATGRAADTSK-MYVVCGAI 194
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  V  A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAV-DAEGRQIPGEKTTYAISGFV 59

Query: 195 RRMGESDDCIVRLTKKDGIL 254
           R  GESDDCI RLT +DG+L
Sbjct: 60  RSKGESDDCINRLTTQDGLL 79


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 100 SLAWMRRLLAEHFLGQYKSTNSPASFCILXV 8
           SL  M  +L EH+ G++    SP   CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 118 SCTEAWSLAWMRRLLAEHFLGQYKST 41
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -2

Query: 194 DSPT--DNIHFRCVSSTTCGGVYVSN 123
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 262 FLXSIPSFFVNLTMQSSDSPILRIAPQTTYILDVSAARP 146
           F  S+P   V L     D+P + + P ++YI   SA  P
Sbjct: 288 FPLSLPGQSVELAW---DAPGMAVGPNSSYITSTSAGTP 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,177,644
Number of Sequences: 5004
Number of extensions: 19280
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)