Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e20
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     70   3e-13
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    69   1e-12
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    29   0.98 
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217...    26   6.9  
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790...    25   9.2  
01_06_1636 - 38800814-38800918,38801024-38801169,38801276-388013...    25   9.2  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 36/75 (48%), Positives = 47/75 (62%)
 Frame = +3

Query: 18  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKMYVVCGAIR 197
           MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I  V    G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHV-DENGLYDGRFTTFALSGFIR 59

Query: 198 RMGESDDCIVRLTKK 242
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 35/75 (46%), Positives = 46/75 (61%)
 Frame = +3

Query: 18  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKMYVVCGAIR 197
           MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I  V    G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHV-DENGLYDGRFTTFALSGFIR 59

Query: 198 RMGESDDCIVRLTKK 242
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 13  IRCRTTPVNSLTCTARGNARPATASST 93
           +RCR+TP +SLT     N  PA++SS+
Sbjct: 82  LRCRSTPRDSLTYNTLLNHLPASSSSS 108


>02_02_0648 -
           12619468-12619874,12621432-12621512,12621607-12621716,
           12621896-12622164,12622440-12622567,12622637-12622699,
           12623196-12623493
          Length = 451

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 25  TTPVNSLTCTARGNARPATASSTL--RTMLQC 114
           TT   S  C  RG++ P+TA + L  R M +C
Sbjct: 371 TTVAESNPCRCRGHSTPSTARAALWPRCMTRC 402


>02_02_0211 +
           7898434-7898574,7898759-7899349,7899575-7899821,
           7900020-7900118,7900158-7900321,7900371-7900870,
           7901007-7901256,7901461-7901549,7901823-7902064,
           7902175-7902479,7902798-7902906,7903150-7903313
          Length = 966

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 13  IRCRTTPVNSLTCTARGNARPATASSTLRTMLQCS 117
           + CR TPV S T +   N RP   +  ++   QCS
Sbjct: 413 VECRHTPVVSRTYST--NKRPLPTTEVVKLTEQCS 445


>01_06_1636 -
           38800814-38800918,38801024-38801169,38801276-38801381,
           38801609-38801686,38801786-38801839,38801920-38801992,
           38802059-38802183,38802268-38802357,38802447-38802526,
           38802869-38802995,38803145-38803227,38803575-38803710
          Length = 400

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 27  DAGEFVDLYCPRKCSASNRLIHAKDHASVQLV-IADVXP 140
           DAG F+D+ C  +  +  RL+ +  + +VQL  +++V P
Sbjct: 207 DAGIFLDILCSSEDLSGKRLMWSVFNGTVQLQNVSEVLP 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,096,166
Number of Sequences: 37544
Number of extensions: 146745
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)