Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7e15
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.24
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 29 0.72
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 1.3
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 28 1.7
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 2.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.8
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 5.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 6.7
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 25 8.9
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 8.9
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 8.9
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 266 LAFLWPIKKSKEPIDQ--EKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQ 418
L FL IK K + + +KL K V + ++ ENG YEE + + K + +++
Sbjct: 1023 LLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAIENGLYEEAFRIYKIHNKHE 1075
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 275 LWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLK 400
LW + K K V+D++D L + H+EE LL+
Sbjct: 253 LWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLE 294
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +2
Query: 587 ILDAKSHHNGIKERIQQLENVKKHMDLAVT 676
+++ + HN I +R+Q++E++ + +L VT
Sbjct: 724 LVEERERHNAISKRLQEIESLYRDRELLVT 753
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 151 LNKSNLLFK*FVETKSNKSCERDHTDTISKKLNI-YFYRFSIFVAH 285
+NK + F + SN CE DH + I + ++ +Y + IF H
Sbjct: 78 VNKDGIFRYDFNQVASNDPCEDDHVEVIDRNIDEGNWYFWGIFDGH 123
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Frame = +2
Query: 491 QKKDFIFQAYEIICKHLNNNENNFAV--HKWYALILDA-------KSHHNGIKERIQQLE 643
+KK + Q+Y I H+ N +N + +Y ILD ++ I++L
Sbjct: 792 EKKKSVSQSYYIFVSHVTANYSNQLLFSQSFYQGILDGLCNIDVPDDKREVVEAAIEELL 851
Query: 644 NVKKHMDLAVTL 679
V +H D+A TL
Sbjct: 852 TVYEHFDIATTL 863
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 257 STGLAFLWPIKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLKNYEENQDIEIQW 436
S G+A L + K+ ++ +L + DE+ + YE+ Y +K N I
Sbjct: 398 SNGMAILTELAKASSQSIPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDI 457
Query: 437 RICRAL 454
+I R++
Sbjct: 458 KIPRSI 463
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 137 NLYPILTKVICFSSDLLKPNRIKVAREITQIQFPRNLIFISTGLAFLWPIKKSKEPIDQE 316
N P+ T+ FSS L KP+ + ++Q P+N + L + + +
Sbjct: 495 NSSPVQTRTSLFSSRLSKPSN-PIVSSVSQANAPKNALHSMPSPTSLANLPSNLSDTQYK 553
Query: 317 KLKKLSVID 343
KL L +++
Sbjct: 554 KLYNLYLVE 562
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 353 ELFENGHYEECYNLLKNYEE-NQDIEIQWRICRALYNMAKESKYNNAQKKDFIFQAYEII 529
+LF+N H+E +L+ Y+ N++ + A + E +Y QK + EI+
Sbjct: 233 DLFQNSHFESLLVMLRKYDSPNKNAVLILPTLYAFIDKVLEVEYLPDQKVQLRSNSVEIL 292
Query: 530 CK 535
K
Sbjct: 293 QK 294
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 195 FGFNKSLEKQITFVKIGYKFLYLDIV 118
F LEK + IGY F YL IV
Sbjct: 149 FNLVHELEKYHAIISIGYMFRYLKIV 174
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 8.9
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = +2
Query: 284 IKKSKEPIDQEKLKKLSVIDDSDELFENGHYEECYNLLK-NYEENQDIEIQWRICRALYN 460
+++ K+ D + KL+++DD + Y E + +YE + + L N
Sbjct: 690 LEREKKMSDAMRQTKLTIVDDHNSRKLESQYNEFISQCSAHYENVFSLNLVISDAMKLTN 749
Query: 461 MAKESKYNNAQKKDFIFQAYEIICKHLNNNENNFAVHKWYALILDAKSHHNGIKERIQQL 640
++ NN I + E++ K + F+ W L H++ +
Sbjct: 750 NIADALKNNKVNIGTIKASLEVLVKCIAPIIPCFSSECWLLL-----GHNSSVYSNWPIS 804
Query: 641 ENVKKHMDLAVTL 679
+N K++M+ VT+
Sbjct: 805 KNKKENMEEPVTI 817
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 661 HMFFNILKLLNSLFYAI 611
H +++I+ LLNS+FY +
Sbjct: 270 HFYYSIIYLLNSMFYLL 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,850
Number of Sequences: 5004
Number of extensions: 66764
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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