Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7e15
(758 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 24 1.3
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 24 1.3
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 24 1.3
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 24 1.8
U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein. 24 1.8
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 3.1
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 7.2
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 7.2
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 7.2
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 7.2
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 560 FAVHKWYALILDAKSHHNGIKERI 631
F K+Y I+DA H + IK I
Sbjct: 7 FETSKYYVTIIDAPGHRDFIKNMI 30
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 560 FAVHKWYALILDAKSHHNGIKERI 631
F K+Y I+DA H + IK I
Sbjct: 23 FETSKYYVTIIDAPGHRDFIKNMI 46
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 560 FAVHKWYALILDAKSHHNGIKERI 631
F K+Y I+DA H + IK I
Sbjct: 80 FETSKYYVTIIDAPGHRDFIKNMI 103
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 560 FAVHKWYALILDAKSHHNGIKERI 631
F K+Y I+DA H + IK I
Sbjct: 80 FETAKYYVTIIDAPGHRDFIKNMI 103
>U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein.
Length = 182
Score = 23.8 bits (49), Expect = 1.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 264 PVEINIKFLGNCICVISLAT 205
P E+ K LGNC+ V + T
Sbjct: 21 PAELTAKLLGNCVRVSPVIT 40
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.0 bits (47), Expect = 3.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 113 FSKFQSYSENDY*SKV*ALYTRNYENNINYV 21
++ + +Y+ N+Y + LY +NY NI +
Sbjct: 327 YNNYNNYNNNNYNNYNKKLYYKNYIINIEQI 357
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 464 AKESKYNNAQKKDFIFQAYEIICKHLNNNENNFAVHKWY 580
+KE K ++ ++ + Y + NNN NN+ +Y
Sbjct: 309 SKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYY 347
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 7.2
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = -1
Query: 695 LHHWDLVLLQDPYVF*HSQV------VEFSLLCHCDGFL-HLKLEHTICALQNYFHCY 543
+HH+D + L D Y H V F+L + +G + +L H I + Q + +
Sbjct: 136 IHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIF 193
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 7.2
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = -1
Query: 695 LHHWDLVLLQDPYVF*HSQV------VEFSLLCHCDGFL-HLKLEHTICALQNYFHCY 543
+HH+D + L D Y H V F+L + +G + +L H I + Q + +
Sbjct: 136 IHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIF 193
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 7.2
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = -1
Query: 695 LHHWDLVLLQDPYVF*HSQV------VEFSLLCHCDGFL-HLKLEHTICALQNYFHCY 543
+HH+D + L D Y H V F+L + +G + +L H I + Q + +
Sbjct: 187 IHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIF 244
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 7.2
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = -1
Query: 695 LHHWDLVLLQDPYVF*HSQV------VEFSLLCHCDGFL-HLKLEHTICALQNYFHCY 543
+HH+D + L D Y H V F+L + +G + +L H I + Q + +
Sbjct: 136 IHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIF 193
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,778
Number of Sequences: 438
Number of extensions: 4838
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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