Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e14
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    28   0.59 
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   4.2  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   4.2  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   5.5  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    24   9.7  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    24   9.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   9.7  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    24   9.7  

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
           +QV+PD   S +  R++N F+ND  E
Sbjct: 46  KQVHPDTGISNQAMRILNSFVNDIFE 71


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 165 CPWSKPLLAIG 197
           CPW K LLA+G
Sbjct: 340 CPWQKSLLAVG 350


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 23  LEIEQALDAILNKNTSSID***VLVKMSNLMKNFFTE 133
           + +E  LD ++N    ++    +L+KMS++MK   TE
Sbjct: 283 MSLESPLDIVVNAGAIALP---ILLKMSSIMKKKHTE 316


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 77  LLSWYFCLKSHQA 39
           LL+WYFC + H +
Sbjct: 175 LLNWYFCTQEHDS 187


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 165 CPWSKPLLAIGCANKSIRTRIF 230
           CPW + LLA G  +     R +
Sbjct: 373 CPWQRSLLATGAGSHDKHIRFY 394


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 49  DFKQKYQLNRLIISAR*N---VQFNEKLFHRTGQIDNVHH*GVRGQNH 183
           D K+  Q+  + ISA  +     F E++ + TG+I ++H   VRG+++
Sbjct: 52  DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHE--VRGKDN 97


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 112  NEKLFHRTGQIDNVHH*GVRGQN 180
            ++K + RTGQ+  +HH   + QN
Sbjct: 1241 DKKSYSRTGQLGFIHHLKKKDQN 1263


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +3

Query: 48  RF*TKIPAQ*IDNKCSLKCPI**KT----FSPNWSNRQRSPLRCPWSKPLLAIGCANKSI 215
           R+   + A+  D KCS+ C I   T     +       + P R PWSK ++  G     I
Sbjct: 250 RYEMVLQAELPDFKCSIPCLIDTGTQANIITEETVRAHKLPTR-PWSKSVIYGGVYPNKI 308

Query: 216 RTRIFRLNLN 245
             +  +LN++
Sbjct: 309 NRKTIKLNIS 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,976
Number of Sequences: 5004
Number of extensions: 21908
Number of successful extensions: 46
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)