Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7e14
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1090 + 24254172-24254624 27 7.1
05_07_0203 + 28391707-28392165 27 7.1
03_02_0560 + 9462996-9463454 27 7.1
01_06_1288 - 36007432-36007851 27 7.1
01_01_0366 + 2871188-2871655 27 7.1
01_01_0364 - 2856598-2857059 27 7.1
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 27 7.1
01_01_0360 - 2837046-2837507 27 7.1
01_01_0358 - 2819235-2819696 27 7.1
01_01_0331 + 2685802-2686263 27 7.1
01_01_0329 + 2673479-2673940 27 7.1
05_05_0111 + 22479971-22480093,22480238-22480471 26 9.4
02_02_0255 + 8357963-8358356,8358948-8359024,8359201-8359276,835... 26 9.4
>08_02_1090 + 24254172-24254624
Length = 150
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 72 KQVHPDIGISSKAMSIMNSFINDIFE 97
>05_07_0203 + 28391707-28392165
Length = 152
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 74 KQVHPDIGISSKAMSIMNSFINDIFE 99
>03_02_0560 + 9462996-9463454
Length = 152
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 74 KQVHPDIGISSKAMSIMNSFINDIFE 99
>01_06_1288 - 36007432-36007851
Length = 139
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 61 KQVHPDIGISSKAMSIMNSFINDIFE 86
>01_01_0366 + 2871188-2871655
Length = 155
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 77 KQVHPDIGISSKAMSIMNSFINDIFE 102
>01_01_0364 - 2856598-2857059
Length = 153
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 612 KQVHPDIGISSKAMSIMNSFINDIFE 637
>01_01_0360 - 2837046-2837507
Length = 153
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0358 - 2819235-2819696
Length = 153
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0331 + 2685802-2686263
Length = 153
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>01_01_0329 + 2673479-2673940
Length = 153
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
+QV+PD S K ++N F+ND E
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFE 100
>05_05_0111 + 22479971-22480093,22480238-22480471
Length = 118
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIE 280
E+V+PD S K ++N F+ND E
Sbjct: 40 EKVHPDIGISSKAMSIMNSFVNDIFE 65
>02_02_0255 +
8357963-8358356,8358948-8359024,8359201-8359276,
8359665-8359846,8360173-8360318,8360405-8360669,
8360688-8361053,8361265-8361513
Length = 584
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 58 QKYQLNRLIIS-AR*NVQFNEKLFHRTGQIDN 150
QK+ + RL+ R NV EKLFHR Q DN
Sbjct: 271 QKHSIGRLLDDEGRPNVSVIEKLFHRIDQ-DN 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,891,127
Number of Sequences: 37544
Number of extensions: 120029
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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