Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e14
         (394 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98185-1|CAA66860.1|  123|Anopheles gambiae histone H2B protein.       29   0.081
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   4.0  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    22   9.2  

>X98185-1|CAA66860.1|  123|Anopheles gambiae histone H2B protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 0.081
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 203 EQVYPDKDFSLKLKRVINMFLNDEIENDKIYXLVETVDSSNKLSXRQVDFLIHALL 370
           +QV+PD   S K   ++N F+ND  E       +   +  + ++ R++   +  LL
Sbjct: 45  KQVHPDTGISSKAMSIMNSFVNDIFERIARKSRLAHYNKRSTITSREIQTAVRLLL 100


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 200 CEQVYPDKDFSLKLKR 247
           CE+ YPD  F++ L+R
Sbjct: 222 CEEPYPDIIFNITLRR 237


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -2

Query: 126 KKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLF 4
           K  ++KL+ + S +  S        +  + CS S+F    F
Sbjct: 351 KADYVKLNDMISMFNNSFHCSNFISLDEAVCSFSSFMLQAF 391


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,166
Number of Sequences: 2352
Number of extensions: 5351
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30784536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)