Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e09
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                   62   6e-10
SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)                   29   2.8  
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   6.6  
SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)              28   6.6  

>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 29/79 (36%), Positives = 47/79 (59%)
 Frame = +1

Query: 139 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKELLNRM 318
           IF  I  K    EIL+EDD+   FRDI P +  H+L IPK+ I  +     +D++LL R+
Sbjct: 7   IFGKIIRKEIPAEILHEDDQCLAFRDINPQAPTHVLVIPKKPIRQLSMADDSDEQLLGRL 66

Query: 319 MSISRELLSKNNLSIEDAR 375
           + ++R++ +  NL+ +  R
Sbjct: 67  LIVARKVAAMQNLANDGYR 85


>SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)
          Length = 514

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 253 PKRHIEDV--KSLTSADKELLNRMMSISRELLSKNNLSIED 369
           P R  ED    ++++ D  LLN+   I+ ELL  N LS+ D
Sbjct: 240 PNRTFEDAIWATVSNRDTNLLNKSQLITVELLDCNTLSVSD 280


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 253 PKRHIEDV--KSLTSADKELLNRMMSISRELLSKNNLSIED 369
           P R  ED    ++++ D  LLN+   I+ ELL  N LS+ D
Sbjct: 383 PNRTFEDAIWATVSNRDTNLLNKSQLITVELLDCNTLSVSD 423


>SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 346 KNNLSIEDARFGYHWP-PFRSVKHLHLHTIAP 438
           + +L +ED++FGY +P PF SV  L +  I P
Sbjct: 207 QTSLFLEDSQFGYFYPLPFDSVVKLGIINIPP 238


>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1213

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 372 TLWVSLATVSFSQTFASAYYST*IRDGIHW 461
           T+   +AT   S+T+ + YY +  RDG+ W
Sbjct: 333 TVVSGIATKGMSETWCTGYYLSYSRDGLEW 362


>SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 450 GIHWKSDIQKKLLLVCFAGICRLYFNVKCNWS 545
           G H  SDI   ++ VCF   CRL +   CN++
Sbjct: 210 GCHRSSDIHLNIVYVCFLNRCRLNY---CNFN 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,307,919
Number of Sequences: 59808
Number of extensions: 397996
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)