Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7e05
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 8e-15
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0) 30 2.0
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0) 30 2.0
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18) 28 6.2
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2) 28 8.1
SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 858
Score = 77.8 bits (183), Expect = 8e-15
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Frame = +3
Query: 132 QALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMV 311
+A E+R + K GA++ EE S ++D+L +I+ C CFKE ++++E+++NSI+S+++
Sbjct: 49 KAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFKE--DAELESVMNSILSLVL 105
Query: 312 SIPLERGENLILAFSQRLTKAPGPKLGMVA---LQSLWRLYNNLEPNSPLRYHVYYHVIE 482
+P +R E LI +L A L+ L L++ L P+R+ VY +
Sbjct: 106 VVPEKRNE-LIKKCCDKLKANMSEDENSSAAARLRVLSVLFSGLPEKDPMRHEVYCTQLT 164
Query: 483 LAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQ 620
+AA+ V ++ T +E ++ +Q ++++RLLH L D+
Sbjct: 165 IAAKASLVDDIPTELELVKGWLGLWDVDADQRRQVFRLLHGALHDE 210
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 123 LEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVS 302
L+D ELR SLGA + +E L ++ G+C+ E + E + N V
Sbjct: 2972 LDDMITELRNAEISLGASLMGTPDLDQLESQLEEVKGLCED--MEGKQELFENLKNKGVD 3029
Query: 303 IMVSIPLE 326
+M IP E
Sbjct: 3030 MMEKIPEE 3037
>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 320 WYRNHNRDNTVQNGFDIRFTRLFETSITNPNDLMQII-LNAL 198
WY R N V+NGFDI + ++T+P ++ LN++
Sbjct: 72 WY-GRRRQNCVRNGFDITVLTRYSEAVTHPRTYRALLSLNSV 112
>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
Length = 965
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 513 VFTGV-EQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGXYTDENAS 686
++TGV QL L RL HQ D++S+L+ V + L G +TD S
Sbjct: 814 LYTGVARQLPSNVHMLTLETSNQYALIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVS 872
>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
Length = 887
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 513 VFTGV-EQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGXYTDENAS 686
++TGV QL L RL HQ D++S+L+ V + L G +TD S
Sbjct: 802 LYTGVARQLPSNVHMLTLETSNQYALIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVS 860
>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1801
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 513 VFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGXY-TDENAS 686
V + V + K +C P+++ ++KL++L+ + K+ E++ K + L G Y T +NA+
Sbjct: 618 VASAVLDIGKTLLDCVPTSDLVEKLFQLVSKTGKEW-KEVSKKAVSILCGPYLTADNAT 675
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 311 NHNR-DNTVQNGFDIRFTRLFETSITNPND 225
NHNR +N + D+R TR + ++ NP D
Sbjct: 613 NHNRAENNEEKKLDLRSTRELQGAVLNPRD 642
>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
Length = 1719
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +3
Query: 249 FKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQRLTKAPGPKLGMVALQSLWRLYN 428
FKE ++ I ++ IV + V + E+G L + + + S RL+
Sbjct: 1307 FKESGKASIPSVNREIVRVWVDLCSEKGVPLEREAEEMIRLLDESLKHRSRIDSTMRLWM 1366
Query: 429 NLEPNSPLRYHV 464
+ P+ P+ HV
Sbjct: 1367 KIAPHVPVEIHV 1378
>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
Length = 351
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 438 PNSPLRYHVYYHVIE 482
P+ PL YH +YHVI+
Sbjct: 288 PDDPLDYHFFYHVID 302
>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 543 EFANCPPSNEQMQKLYRLLHQVLKDQNSELAAK---VMIELLGXYTDEN 680
EF P E + RLL Q+ DQ+SELA + + LG Y D N
Sbjct: 294 EFKLKSPDVEDRLAVTRLLSQMFSDQSSELAIQNKSLWQSYLGRYLDIN 342
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,598,481
Number of Sequences: 59808
Number of extensions: 346517
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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