Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e03
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.36 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   1.9  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   7.8  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 115 FVLFIAAAVSADXEPVLARLLVSKQVLNK 201
           F+LFI+ A+S    PVLAR+L    +L+K
Sbjct: 159 FLLFISTAMSITAFPVLARILSELHLLHK 187


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 248 LNXVYFTSISIFSTKYLFSTCF 183
           LN   FTS+S+ S+KY F T F
Sbjct: 156 LNDACFTSLSMKSSKYSFLTAF 177


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 244 FNVGSAPAVEVKLVDNGFHPDV 309
           FNVG +  V V L D  FH DV
Sbjct: 86  FNVGISVIVRVTLKDGSFHEDV 107


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 359 GAILSISAVSCPPXTVNTSGWKPLSTSFTSTAGALPTLNXVYFTSI 222
           G ++ ++    PP   N  G +P + +   + G L  ++ ++ TSI
Sbjct: 191 GVLIQMAFPCSPPWYENMYGLEPATYAVRGSPGGLARIDALFGTSI 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,086
Number of Sequences: 5004
Number of extensions: 29657
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)