Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e03
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14...    52   2e-07
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14...    44   9e-05
05_05_0266 - 23694466-23696787,23696885-23697187                       30   1.1  
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836...    29   1.5  
04_03_0521 + 16765347-16767324,16769202-16769392                       29   2.6  
04_04_0895 - 29168107-29168229,29168617-29170068                       27   7.9  

>01_01_0020 +
           147147-147313,148450-148548,148634-148742,148856-148927,
           149056-149061,150811-150915,151048-151539,151629-152025,
           152178-153646,154010-154450,154543-155214
          Length = 1342

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 35/112 (31%), Positives = 56/112 (50%)
 Frame = +1

Query: 106 LLYFVLFIAAAVSADXEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 285
           LL  +L  AA+ SAD   ++A   VS     K  VE +   V   L+N GSA A +V + 
Sbjct: 8   LLLLLLAAAASASADAPFLVAHKKVSLS-RPKPGVERL--AVSLDLYNQGSATAYDVSIN 64

Query: 286 DNGFHPDVFTVXGGQLTAEIDRIAPXTNVSHVVTVRSNKYGYFNFSSAEVTY 441
           D+ +  + F +  G+++  ++R+ P    SH   + +   G F  S A +TY
Sbjct: 65  DDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITY 116


>05_01_0021 -
           148084-148191,148387-148488,148641-148727,148845-148979,
           149109-149324,149772-150043,151346-151394,151521-151526,
           151657-151728,152077-152185,152272-152370,153186-153364
          Length = 477

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 31/112 (27%), Positives = 52/112 (46%)
 Frame = +1

Query: 106 LLYFVLFIAAAVSADXEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 285
           LL  ++  AAA   D   V+A+    K  L++       + V   L+N GSA A +V L 
Sbjct: 12  LLLLLVPFAAAAGQDAPFVVAQ---KKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLN 68

Query: 286 DNGFHPDVFTVXGGQLTAEIDRIAPXTNVSHVVTVRSNKYGYFNFSSAEVTY 441
           D+ +  + F +  G  +  ++++ P    SH   + +   G F  S A +TY
Sbjct: 69  DDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITY 120


>05_05_0266 - 23694466-23696787,23696885-23697187
          Length = 874

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 115 FVLFIAAAVSADXEPVLARLLVSKQVLNKYL 207
           F+LF+  A+S    PVLAR+L   ++LN  L
Sbjct: 196 FLLFLGVALSVTAFPVLARILAEVKLLNSDL 226


>01_06_1133 +
           34781799-34782071,34782168-34783166,34783252-34783663,
           34783727-34784670
          Length = 875

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 115 FVLFIAAAVSADXEPVLARLLVSKQVLNKYL 207
           F+LF+  A+S    PVLAR+L   ++LN  L
Sbjct: 186 FLLFLGVALSVTAFPVLARILAEIKLLNTEL 216


>04_03_0521 + 16765347-16767324,16769202-16769392
          Length = 722

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 175 LVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVDNGFHPDVFT 315
           ++ + VL K L+ N  I     +  +  A ++  K+VD+G  PD+FT
Sbjct: 74  MMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFT 120


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 347 SISAVSCPPXTVNTSGWKPLSTSFTSTAGALPTL 246
           S S+ SCPP   ++S    LST+ TS   A  T+
Sbjct: 45  SSSSSSCPPDAASSSSSVRLSTNGTSAGAAAVTV 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,217
Number of Sequences: 37544
Number of extensions: 190028
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)