Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e03
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)                       27   6.1  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 292  RCPRVSLQQPVRSQH*TXCILLVYPYSLLNI 200
            R P   L  P+RS + T  + L YPY+LL I
Sbjct: 1437 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1467



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 292  RCPRVSLQQPVRSQH*TXCILLVYPYSLLNI 200
            R P   L  P+RS + T  + L YPY+LL I
Sbjct: 1459 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1489



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 292  RCPRVSLQQPVRSQH*TXCILLVYPYSLLNI 200
            R P   L  P+RS + T  + L YPY+LL I
Sbjct: 1481 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1511



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 292  RCPRVSLQQPVRSQH*TXCILLVYPYSLLNI 200
            R P   L  P+RS + T  + L YPY+LL I
Sbjct: 1503 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1533



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 292  RCPRVSLQQPVRSQH*TXCILLVYPYSLLNI 200
            R P   L  P+RS + T  + L YPY+LL I
Sbjct: 1525 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1555



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 292  RCPRVSLQQPVRSQH*TXCILLVYPYSLLNI 200
            R P   L  P+RS + T  + L YPY LL I
Sbjct: 1591 RYPYALLTVPLRSTYDTLTLYLRYPYPLLTI 1621



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 292  RCPRVSLQQPVRSQH*TXCILLVYPYSLLNI 200
            R P   L  P+RS + T  + L YPY+LL I
Sbjct: 1547 RYPYALLTIPLRSTYDTLTLNLRYPYALLTI 1577


>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 523

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 417 VEIAVLIGPDSHYMGYVSXRCNPIDFRGQLSTXYSKHVRMEAVVHE 280
           VE+ VL G +  Y G V  + +P D   +++     HV  EA+V E
Sbjct: 54  VELPVLCGGEKVYTGNVKYQVSPFDHSNKIA---KYHVADEALVKE 96


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 347 SISAVSCPPXTVNTSGWKPLSTSFTSTAGALPTLNXV 237
           SI A +    TVN S W   S   TS+A  L TL  V
Sbjct: 872 SILATANKLHTVNRSVWNSTSQVMTSSAAVLSTLKDV 908


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,133,789
Number of Sequences: 59808
Number of extensions: 239743
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)