Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7e03
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...    81   5e-16
Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical pr...    47   6e-06
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z70718-9|CAA94678.2|  371|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    27   9.3  

>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
 Frame = +1

Query: 109 LYFVLFIAAA-VSADXEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 285
           L+ +LF+  + V    +   A +L  KQ L+ Y VENMD +++Y L+NVG  PA +V + 
Sbjct: 5   LFALLFVVVSCVDVGTQTRDAFILAHKQPLSTYAVENMDFVLEYGLYNVGDKPAQKVTID 64

Query: 286 D-NGFHPDVFTVXGGQLTAEIDRIAPXTNVSHVVTVRSNKYGYFNFSSAEVTYXASED 456
           D + F  + F +  G L    ++I   +NV+H V +R   +G+FN+++A+VTY    +
Sbjct: 65  DRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTYYTDNE 122


>Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical
           protein K08F4.3 protein.
          Length = 182

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = +1

Query: 121 LFIAAAVSADXEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVD-NGF 297
           L ++A  +AD     A++L+ K  + KY V   +   +Y + N+G +PA++V+L D   F
Sbjct: 6   LILSALAAADAS---AKILIGKSFVTKYPVAQRENAFEYQIINIGLSPALKVELSDLKSF 62

Query: 298 HPDVFTVXGGQLTAEIDRIAPXTNVSHVVTV 390
             D F +  G  TA    I   + + H + V
Sbjct: 63  PTDRFEILKGSATASFPVIPANSTIYHHIVV 93


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 256 SAPAVEVKLVDNGFHPDVFTVXGGQLTAEIDRIAPXTNVSH 378
           S  A+ V L  NG++  VF V GGQ    + R++    +SH
Sbjct: 633 SGLAILVVLAQNGYNFGVFKVFGGQTLVVLSRLSFGVYLSH 673


>Z70718-9|CAA94678.2|  371|Caenorhabditis elegans Hypothetical
           protein C04G2.9 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 244 FNVGSAPAVEV-KLVDNGFHPDVFTVXGGQLTAEIDRIAPXTNVSHVVTVRSNKYGY 411
           F+ G  P  E  +  D  +HP       G ++  +  +A    +   V VR+ KYGY
Sbjct: 282 FDYGWIPFPEAAQFGDKAWHPVHVNNHKGDISVGVVNVAGGKQILAKVDVRNEKYGY 338


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
           neurexin-like protein 1 protein.
          Length = 1655

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 156 FXIRRHCGSDEEYKI*QFRCHSILVWIN**IF**RIDDQLQSPAXRKSTWLI 1
           F +R       E K+  FR HSI+V I   IF   +DD +   A  +S  L+
Sbjct: 319 FELREDHSISTEKKVSPFRFHSIIVKIVDGIFNMLVDDNVHRRAFNESDALV 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,317
Number of Sequences: 27780
Number of extensions: 169392
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)