Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7d24
(359 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 118 3e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 117 6e-28
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 1.2
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 2.7
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 24 6.2
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 24 6.2
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 24 6.2
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.2
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 24 8.2
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 8.2
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 118 bits (284), Expect = 3e-28
Identities = 52/84 (61%), Positives = 59/84 (70%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGGSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
MTKGT SFG R NK+HT+CRRCG S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEGKPT 280
M +LK V R F+NGF+ GKPT
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPT 84
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 117 bits (281), Expect = 6e-28
Identities = 53/91 (58%), Positives = 60/91 (65%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGGSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
MTKGT SFG R NK+HT+CRRCG S+HIQKS CA CGYPAAK RSY+W KA
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 301
M +LK V R F+NGF+ GKP A A
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 237 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 124
T+F + +PV+ + FT+ W N A +P A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 2.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +1
Query: 97 WIVISHSKIKMRPMWISCSKIT 162
W+ +H K K +W +C+K++
Sbjct: 194 WMAAAHLKPKDHELWFTCAKLS 215
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.2 bits (50), Expect = 6.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 101 IHHIFCITYGSYFGAYRSL 45
+H+I C T G FG Y S+
Sbjct: 266 MHYIVCDTNGYLFGVYSSI 284
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 24.2 bits (50), Expect = 6.2
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +2
Query: 65 NKTHTLCRRCGGSSYHIQKSKCAQCGYP 148
N H C C Y + S C QC P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 24.2 bits (50), Expect = 6.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 135 WAHFDF*M*YDDPPHLLHNVWVLFRRLPKLEVPFVI 28
W+H D D H LHN W R K + F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 24.2 bits (50), Expect = 6.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 337 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 242
IFIYL+ + Y +L R F +KT IT+ P
Sbjct: 17 IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 23.8 bits (49), Expect = 8.2
Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Frame = +2
Query: 74 HTLCRRCGGSSYHIQ-----KSKCAQCG 142
H LC CG HI KC CG
Sbjct: 104 HVLCTTCGAIDDHISVRCPWTKKCMNCG 131
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 8.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +1
Query: 133 PMWISCSKITILPLVSEG*AQEDYW 207
P W+SC+++ +L + +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,746
Number of Sequences: 5004
Number of extensions: 26407
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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