Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc7d24
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 119 6e-28
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 119 6e-28
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 118 2e-27
03_02_0426 + 8365419-8365587,8365697-8365890 27 3.4
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 27 4.4
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289... 27 5.9
05_05_0151 - 22759618-22760017,22760694-22760752 27 5.9
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 26 7.7
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292 26 7.7
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 119 bits (287), Expect = 6e-28
Identities = 51/97 (52%), Positives = 67/97 (69%)
Frame = +2
Query: 11 IVKSDKMTKGTSSFGKRRNKTHTLCRRCGGSSYHIQKSKCAQCGYPAAKLRSYHWSVKAX 190
++ S + KGT SFGKRRNKTHTLC RCG S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 16 LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75
Query: 191 XXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 301
MR+++ V RRF++ F+EG P+K A
Sbjct: 76 RRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAA 112
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 119 bits (287), Expect = 6e-28
Identities = 51/93 (54%), Positives = 66/93 (70%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGGSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
M KGT SFGKRRNKTHTLC RCG S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 307
MR+++ V RRF++ F+EG P+K A++
Sbjct: 61 TGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 118 bits (283), Expect = 2e-27
Identities = 51/93 (54%), Positives = 66/93 (70%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGGSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
M KGT SFGKRRNKTHTLC RCG S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 307
MR+L+ V +RF++ F+EG P+K A++
Sbjct: 61 TGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93
>03_02_0426 + 8365419-8365587,8365697-8365890
Length = 120
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 149 QDIHIGRILIFECDMTIHHIFCITYGSYFGAYRS-LRYPSSS 27
++ G +L+F D ++H++ + G Y G S +Y S +
Sbjct: 48 KNFRAGDVLVFSYDPSVHNVVAVDAGGYSGCRESGTKYSSGN 89
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 142 ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 237
I+ +T + +S + +D W W PH +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149
>11_01_0382 -
2892887-2893161,2893593-2893717,2893801-2894013,
2894101-2895363,2895669-2895712
Length = 639
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 14 VKSDKMTKGTSSFGKRRNKTHTLCRRCGGS 103
VK K+TKG S+G RN++ RC GS
Sbjct: 69 VKKMKLTKGLWSWGHHRNRSFK--ARCDGS 96
>05_05_0151 - 22759618-22760017,22760694-22760752
Length = 152
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 47 SFGKRRNKTHTLCRRCGG 100
S+G R +T +CR+CGG
Sbjct: 80 SWGLFRKRTRLICRKCGG 97
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 53 GKRRNKTHTLCRRCGGSSYHIQKSK----CAQCGYPAAK 157
G+ + K T CR CG + K CA+CG+P K
Sbjct: 9 GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46
>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
Length = 222
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 41 TSSFGKRRNKTHTLCRRCGGSSYHIQKS 124
T +FG K HT CR CG +S++ +S
Sbjct: 26 TYTFGTHTAK-HTFCRVCGITSFYTPRS 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,136
Number of Sequences: 37544
Number of extensions: 185707
Number of successful extensions: 398
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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