Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d24
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   5e-05
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)                 27   3.5  
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)                      27   4.6  
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.6  
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)                      26   8.0  
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                 26   8.0  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 170 HWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 307
           +WS+KA          MRHLK+V RRF+NGF+EG +    KK VA++
Sbjct: 2   NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEGTQAKSQKKNVAAA 48


>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
          Length = 856

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
 Frame = +2

Query: 17  KSDKMTKGTSSFGKRRNKTHTLCRRCG-----GSSYHIQKSKCAQCG 142
           + D+  K       +  K  T C RCG     G S   +K KC  CG
Sbjct: 332 RPDRAAKHKKFTQNKGGKPKTACHRCGSAEHDGKSCKYKKYKCDNCG 378


>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
          Length = 364

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 139 WISCSKITILPLVSEG*AQEDYWNWPHASF 228
           W++C K+ +LP+ ++      Y  W +  F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165


>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 139 WISCSKITILPLVSEG*AQEDYWNWPHASF 228
           W++C K+ +LP+ ++      Y  W +  F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326


>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
          Length = 132

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 80  LCRRCGGSSYHIQKSK 127
           LCR C GS Y +QK K
Sbjct: 70  LCRPCEGSLYRLQKGK 85


>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1124

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 237 SGGASVMVLKKGNQRRPRR 293
           S G+ V +L+K N+RRP++
Sbjct: 259 SNGSGVFILQKPNERRPKK 277


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 83  CRRCGGSSYHIQKSKCAQCG 142
           C +C G SY +  + C  CG
Sbjct: 581 CTKCAGGSYSVAGNDCQFCG 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,757
Number of Sequences: 59808
Number of extensions: 205651
Number of successful extensions: 703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)