Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc7d16
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    77   6e-16
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    75   3e-15
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    71   7e-14
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   1.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   2.6  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.5  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   4.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   4.5  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   4.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    24   7.9  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    24   7.9  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 77.4 bits (182), Expect = 6e-16
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +2

Query: 95  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 274
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 275 NIGSG 289
           NIGSG
Sbjct: 61  NIGSG 65


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 74.9 bits (176), Expect = 3e-15
 Identities = 34/64 (53%), Positives = 49/64 (76%)
 Frame = +2

Query: 95  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 274
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 275 NIGS 286
           NIGS
Sbjct: 61  NIGS 64


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 70.5 bits (165), Expect = 7e-14
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = +2

Query: 95  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 274
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 275 NIGS 286
           NIGS
Sbjct: 61  NIGS 64


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 77  RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 247
           R+ L+ +   E     S L+L +  DV  A++ E+IS IL  +      +W      AL 
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161

Query: 248 GINVRDLIT 274
           G+N++D I+
Sbjct: 162 GLNIKDAIS 170


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 135 MRAE*THANSAFDTIFS-FERASCRRP*LKREQARLSSDNKEKQES 1
           +R +  H      TI +  ER SCRRP L  +  RL+   + +Q S
Sbjct: 213 LRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEVLERQQRS 258


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 59  GLRQLARSKLKMVSKAELACVYSAL 133
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 266 GHGH*CLPRLWRTDL 222
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 271 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFL-TSYGNIIIN 140
           D +  + +F   G   W  ++Y+       GGNF  T  G+I +N
Sbjct: 575 DSLNHLHSFPNNGLNGWVSYIYVSGDSSYFGGNFTHTGDGSIKLN 619


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 269 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 162
           SGHG    P L +  +  M   L+ PL + W++  +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 265 VTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIN-QDESRVN 119
           +  ID+  GF  + W ++  IY+ R   G     +Y + I N + +SR+N
Sbjct: 129 ILPIDSAGGFLIEWWNVFWDIYNARRGQGSEPAKAYMSHISNLRKKSRLN 178


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 209 LHLQPPLSRWWKFS 168
           LH+Q  L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,483
Number of Sequences: 5004
Number of extensions: 21875
Number of successful extensions: 70
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)